PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027081170.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARF

Protein Properties

Length: 669aa MW: 74271.9 Da PI: 6.672

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027081170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.4e-23	128	228	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+kvlt sd++++g +++ +k+a+e+ + ++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF + ++ XP_027081170.1 128 FCKVLTASDTSTHGGFSVLRKHANEClppldMTQPVPTQELVAKDLHGTEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGASG 220 99**************************9555556669********************************************..34899 PP ..EEEEE- CS B3 91 elvvkvfr 98 el+v+v+r XP_027081170.1 221 ELRVGVRR 228 99*997 PP
2	Auxin_resp	101.6	1e-33	254	333	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++++++ + vGmRfkm+fe+eds+err+sGt+vgv+d +++W++SkWrsLk XP_027081170.1 254 ASHAVATGTLFVVYYKPRT--SQFIIGLNKYLESINNGFGVGMRFKMRFEGEDSPERRFSGTIVGVED-ISLQWKDSKWRSLK 333 789*************6..9******************************************.667*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MASRGSLIQQ HQSNGSVEGQ DDLYTELWKA CAGPLVDVPK PKESVYYFPQ GHMEQLEAST 60 NQELNQRIPM FGLPPKILCN VVDIQLLAEQ ETDEVYAQIT LIPEPDHTEQ TSPDSCPSEP 120 PKPTVHSFCK VLTASDTSTH GGFSVLRKHA NECLPPLDMT QPVPTQELVA KDLHGTEWHF 180 KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD SFVFLRGASG ELRVGVRRFA RQQSSMPSSV 240 ISSHSMHLGV LATASHAVAT GTLFVVYYKP RTSQFIIGLN KYLESINNGF GVGMRFKMRF 300 EGEDSPERRF SGTIVGVEDI SLQWKDSKWR SLKVQWDEPA SITRPERVSP WEIEPFVAAV 360 PTSLVPSVTG KNKRLRSHSE LLPPECPRSQ LRSANQNHMD ISCSQLQGSR NCNLRTHAEG 420 DWLSSSQGNT SVSRFADEME SKSTIAWTTL TSCSATPAKL SNHSQSHLHD GRKPDTVASC 480 RLFGIDLISP STGALDKELL KPVNASNVTT QECLPNTLSG CGSEHKSDLS KDSKDQIVGQ 540 LQLPSKEVQS KQSGSTRSRT KVQMQGVAVG RAVDLTMLTG YNELIVELEK MFEIKGELSP 600 RNKWEIIFTD DEGDMMLMGD DPWPEFCKMV RRIFICSGQD VKIMRAGSKL PLPSADNDGT 660 TFNWENGED

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MASRGSLIQQ HQSNGSVEGQ DDLYTELWKA CAGPLVDVPK PKESVYYFPQ GHMEQLEAST  60
NQELNQRIPM FGLPPKILCN VVDIQLLAEQ ETDEVYAQIT LIPEPDHTEQ TSPDSCPSEP  120
PKPTVHSFCK VLTASDTSTH GGFSVLRKHA NECLPPLDMT QPVPTQELVA KDLHGTEWHF  180
KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD SFVFLRGASG ELRVGVRRFA RQQSSMPSSV  240
ISSHSMHLGV LATASHAVAT GTLFVVYYKP RTSQFIIGLN KYLESINNGF GVGMRFKMRF  300
EGEDSPERRF SGTIVGVEDI SLQWKDSKWR SLKVQWDEPA SITRPERVSP WEIEPFVAAV  360
PTSLVPSVTG KNKRLRSHSE LLPPECPRSQ LRSANQNHMD ISCSQLQGSR NCNLRTHAEG  420
DWLSSSQGNT SVSRFADEME SKSTIAWTTL TSCSATPAKL SNHSQSHLHD GRKPDTVASC  480
RLFGIDLISP STGALDKELL KPVNASNVTT QECLPNTLSG CGSEHKSDLS KDSKDQIVGQ  540
LQLPSKEVQS KQSGSTRSRT KVQMQGVAVG RAVDLTMLTG YNELIVELEK MFEIKGELSP  600
RNKWEIIFTD DEGDMMLMGD DPWPEFCKMV RRIFICSGQD VKIMRAGSKL PLPSADNDGT  660
TFNWENGED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein