PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027081169.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 693aa MW: 76607.3 Da PI: 6.5476 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.2 | 1.5e-23 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+kvlt sd++++g +++ +k+a+e+ + ++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF + ++ XP_027081169.1 128 FCKVLTASDTSTHGGFSVLRKHANEClppldMTQPVPTQELVAKDLHGTEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGASG 220 99****************************9555556669************************************************..34899 PP ..EEEEE- CS B3 91 elvvkvfr 98 el+v+v+r XP_027081169.1 221 ELRVGVRR 228 99***997 PP | |||||||
2 | Auxin_resp | 101.5 | 1.1e-33 | 254 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++++++ + vGmRfkm+fe+eds+err+sGt+vgv+d +++W++SkWrsLk XP_027081169.1 254 ASHAVATGTLFVVYYKPRT--SQFIIGLNKYLESINNGFGVGMRFKMRFEGEDSPERRFSGTIVGVED-ISLQWKDSKWRSLK 333 789***************6..9**********************************************.667*********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 693 aa Download sequence |
MASRGSLIQQ HQSNGSVEGQ DDLYTELWKA CAGPLVDVPK PKESVYYFPQ GHMEQLEAST 60 NQELNQRIPM FGLPPKILCN VVDIQLLAEQ ETDEVYAQIT LIPEPDHTEQ TSPDSCPSEP 120 PKPTVHSFCK VLTASDTSTH GGFSVLRKHA NECLPPLDMT QPVPTQELVA KDLHGTEWHF 180 KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD SFVFLRGASG ELRVGVRRFA RQQSSMPSSV 240 ISSHSMHLGV LATASHAVAT GTLFVVYYKP RTSQFIIGLN KYLESINNGF GVGMRFKMRF 300 EGEDSPERRF SGTIVGVEDI SLQWKDSKWR SLKVQWDEPA SITRPERVSP WEIEPFVAAV 360 PTSLVPSVTG KNKRLRSHSE LLPPESASST ASAVWNPPHD SPLGNGTAEC PRSQLRSANQ 420 NHMDISCSQL QGSRNCNLRT HAEGDWLSSS QGNTSVSRFA DEMESKSTIA WTTLTSCSAT 480 PAKLSNHSQS HLHDGRKPDT VASCRLFGID LISPSTGALD KELLKPVNAS NVTTQECLPN 540 TLSGCGSEHK SDLSKDSKDQ IVGQLQLPSK EVQSKQSGST RSRTKVQMQG VAVGRAVDLT 600 MLTGYNELIV ELEKMFEIKG ELSPRNKWEI IFTDDEGDMM LMGDDPWPEF CKMVRRIFIC 660 SGQDVKIMRA GSKLPLPSAD NDGTTFNWEN GED |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | ARF family protein |