PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027081119.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 803aa MW: 93071 Da PI: 8.7881

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027081119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.8	2.4e-20	66	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trtgC a+++vk + + k++vt++ eHnH+la XP_027081119.1 66 EFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKREAKPITRTGCGACFRVKYDIeSVKYVVTRFIMEHNHPLA 156 6**************98887.8998999********9988867889999************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 803 aa Download sequence
MGLDVCGRLR SFDLNQEPEC DRDTFIEESG GSIGGHEDEE ADELVGAIGV DDVMKLTFDT 60 EEEAGEFYNL YAKLSGFGIR KSNAKRDADG ISRFRKWVCC CEGYRNEKWF NYEDRKREAK 120 PITRTGCGAC FRVKYDIESV KYVVTRFIME HNHPLASEAS VQHIRSYRKV SDAEYAQAKS 180 LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER RKDIFNGDAE GALGFLAAKK 240 DADDMFFYKY HVDNEGRLAR LFWADSKSRA DFSVFGDVLV FDTTYKTNKY RKPLVVLAGV 300 NNHLNSTVFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA VMTDGDSAMR RAIKNLLPDA 360 CHRLCSWHLH RNARSNIRCE EFNNRFYNLM ARKCSTLEFE DRWARLVNEC GVVENEWVKK 420 LYRRRRLWAE AYLRGHFFAG MRSTQRCEKM NAFLNEYLNE KMRLYEFVRS FDLAIAWLRH 480 TESKAVHTSE NTKPVLTTIL PELEGSAAEV FTRNVFFMVR KHLNRQGLLI SEGWSEDGGS 540 RTYYYSKYGG HERSWRVDYD RSTEKLICSC MKFESKGIPC AHMFRVMVVE GMNRIPEACI 600 SKRWTKGVHC TNNRMKAFVA DEQLTQMARY GTLKSSCNTM CYYASYMDDA FNDLQQMFDK 660 HSVDLKEKWI DRGYGGDGFA MDSKVRNDRS RRTFGLLDPR VSRSKGDHKH AEAKKKRKCG 720 HCRQATTNEH AHTKIIRTTQ QFMMIIWKTV WMTRWKNHLK LVRAGATQAN GEDKHLYHNH 780 SVAVEGTQVA NKEVQEKDEA LLL

Sequence ? help Back to Top

Protein Sequence Length: 803 aa Download sequence

MGLDVCGRLR SFDLNQEPEC DRDTFIEESG GSIGGHEDEE ADELVGAIGV DDVMKLTFDT  60
EEEAGEFYNL YAKLSGFGIR KSNAKRDADG ISRFRKWVCC CEGYRNEKWF NYEDRKREAK  120
PITRTGCGAC FRVKYDIESV KYVVTRFIME HNHPLASEAS VQHIRSYRKV SDAEYAQAKS  180
LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER RKDIFNGDAE GALGFLAAKK  240
DADDMFFYKY HVDNEGRLAR LFWADSKSRA DFSVFGDVLV FDTTYKTNKY RKPLVVLAGV  300
NNHLNSTVFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA VMTDGDSAMR RAIKNLLPDA  360
CHRLCSWHLH RNARSNIRCE EFNNRFYNLM ARKCSTLEFE DRWARLVNEC GVVENEWVKK  420
LYRRRRLWAE AYLRGHFFAG MRSTQRCEKM NAFLNEYLNE KMRLYEFVRS FDLAIAWLRH  480
TESKAVHTSE NTKPVLTTIL PELEGSAAEV FTRNVFFMVR KHLNRQGLLI SEGWSEDGGS  540
RTYYYSKYGG HERSWRVDYD RSTEKLICSC MKFESKGIPC AHMFRVMVVE GMNRIPEACI  600
SKRWTKGVHC TNNRMKAFVA DEQLTQMARY GTLKSSCNTM CYYASYMDDA FNDLQQMFDK  660
HSVDLKEKWI DRGYGGDGFA MDSKVRNDRS RRTFGLLDPR VSRSKGDHKH AEAKKKRKCG  720
HCRQATTNEH AHTKIIRTTQ QFMMIIWKTV WMTRWKNHLK LVRAGATQAN GEDKHLYHNH  780
SVAVEGTQVA NKEVQEKDEA LLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	422	427	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-98	FAR1 family protein