PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027081049.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 312aa MW: 34664.1 Da PI: 8.8355

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027081049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	141	195	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k XP_027081049.1 141 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 195 788899***********************************************98 PP
2	HD-ZIP_I/II	129.1	1.8e-41	141	230	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+ en+rL+kev+eLr +l XP_027081049.1 141 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTVENRRLQKEVQELR-AL 230 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MVVDKEDLGL SLSLSFPEKR ATATNSSSSP LQLNLMPSAS PSPFGHLLQQ KSSWTDTLPP 60 SDRSMDACRV ETRAFLKGID VNRLPAATAD AEEEAGVSSP NSTISSISGK RSEREANGED 120 HELERASSRG ISDEEDGDNS RKKLRLSKDQ SAVLEESFKE HNTLNPKQKL ALAKRLGLRP 180 RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ESLTVENRRL QKEVQELRAL KLSPQFYMQM 240 TPPTTLTMCP SCERVGAPPP SSSSSSTAVP ISTPVDPRPR ALVPGHPRPI PFNPWATTPI 300 QHRPFDALHT RS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	SRKKLRL
2	190	198	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-105	HD-ZIP family protein