PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080937.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 994aa MW: 108443 Da PI: 5.2907

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080937.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.5e-29	596	647	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_027080937.1 596 AEKTISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 647 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence
MGEPEEPDKN IARHKKSEGL LTSPAQPPDR DSLIMDLDLD FDACWSFDNF FSAVASSSAS 60 PFLLSTSDHP CSPLWAFSDG SNNNEDKAPV NTAPLSDFSK ILPCNTDLIT ENICGNADKR 120 KPPSSTLELT PLDYPDGYCT IKEKMTQALR FLKDSTEQHV LAQVWVPVKN GGRCVLTTSG 180 QPFVLDPKTN GLYQYRMVSA MYMFSVDGET DGDLGLPGRV FRQKLPEWTP NVQYYSSKEY 240 TRLDHALHYN VRGTLALPVF EPSGQNCVGV LELIMTSQKI NYAPEVDKVC KALEAVNLKS 300 SEVLDQPIIQ VCNEDRQNAL TEILGILTEI CETHKLPLAQ TWVPCRHRSV LANGGGLRKT 360 CSSFDGSCMG QICMSTTDVA FYVVDAHIWG FREACAEHHL QKGQGVAGRA FASHNLCFCE 420 DVTLFCKTEY PLVHYARMFG LNSCFAICLR STHTGDDDYV LEFFLPPSIR DHTGQRALLD 480 SLLVTMKQHL GSLRIASGNE LQQDWRSVDI VKSLVGEKLD SRPKLFQASK PATTSTALTV 540 PEMLQLDSIE LQRPTLGDNC ANDVAHGSGA ARVQNAVSIA ENKDTGKKTE RKRGKAEKTI 600 SLDVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LSKLKRVIES 660 VQGAEGAFTL TSLATSSLPV AVGSACRPSS SSEPHQLGHP GSAPSHDFPG DKNESSLPNG 720 FEHDEKAETS NELPGGRIGE DGFLPGEGSH RSKIGGGSRE ESAGTPTSHG SCQGSPCIRN 780 GSSPLNELVV SPSLEQNMRV GGSVGFTCQP MGEINLSAGF SADAFASVEP QEPFGGMLIE 840 DAGSSHDLQK LCSAAEALFD ERVPEYSWND PPCSDAIPKE STAVATERMP GFSAKLELKT 900 ITIKATYRED IIRFRLPLDS GIDRLKEEIA KRLKLELGTF EIKYLDDDNE WVLIACDADL 960 QECADVSISA ASNLIRLVVY DLMPLLGSSC ESSA

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence

MGEPEEPDKN IARHKKSEGL LTSPAQPPDR DSLIMDLDLD FDACWSFDNF FSAVASSSAS  60
PFLLSTSDHP CSPLWAFSDG SNNNEDKAPV NTAPLSDFSK ILPCNTDLIT ENICGNADKR  120
KPPSSTLELT PLDYPDGYCT IKEKMTQALR FLKDSTEQHV LAQVWVPVKN GGRCVLTTSG  180
QPFVLDPKTN GLYQYRMVSA MYMFSVDGET DGDLGLPGRV FRQKLPEWTP NVQYYSSKEY  240
TRLDHALHYN VRGTLALPVF EPSGQNCVGV LELIMTSQKI NYAPEVDKVC KALEAVNLKS  300
SEVLDQPIIQ VCNEDRQNAL TEILGILTEI CETHKLPLAQ TWVPCRHRSV LANGGGLRKT  360
CSSFDGSCMG QICMSTTDVA FYVVDAHIWG FREACAEHHL QKGQGVAGRA FASHNLCFCE  420
DVTLFCKTEY PLVHYARMFG LNSCFAICLR STHTGDDDYV LEFFLPPSIR DHTGQRALLD  480
SLLVTMKQHL GSLRIASGNE LQQDWRSVDI VKSLVGEKLD SRPKLFQASK PATTSTALTV  540
PEMLQLDSIE LQRPTLGDNC ANDVAHGSGA ARVQNAVSIA ENKDTGKKTE RKRGKAEKTI  600
SLDVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LSKLKRVIES  660
VQGAEGAFTL TSLATSSLPV AVGSACRPSS SSEPHQLGHP GSAPSHDFPG DKNESSLPNG  720
FEHDEKAETS NELPGGRIGE DGFLPGEGSH RSKIGGGSRE ESAGTPTSHG SCQGSPCIRN  780
GSSPLNELVV SPSLEQNMRV GGSVGFTCQP MGEINLSAGF SADAFASVEP QEPFGGMLIE  840
DAGSSHDLQK LCSAAEALFD ERVPEYSWND PPCSDAIPKE STAVATERMP GFSAKLELKT  900
ITIKATYRED IIRFRLPLDS GIDRLKEEIA KRLKLELGTF EIKYLDDDNE WVLIACDADL  960
QECADVSISA ASNLIRLVVY DLMPLLGSSC ESSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein