PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027080754.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 609aa    MW: 69347.3 Da    PI: 6.7487
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027080754.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.52.8e-1142356052374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL++ A+av++ d++ aq+lL++++e++sp gd++ Rla+yf++AL+ar+++++++ly ++++++ s     ++l+a++++  ++P+ ++s++
  XP_027080754.1 235 SSLLTQSAQAVADYDNKTAQELLNQIREHSSPCGDATGRLAHYFANALEARISGMGTTLYTSFTSRKVS---AGDVLKAYQAYILACPFKRMSNI 326
                     689*********************************************************999999998...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      a + I + ++g++++HiiDf+i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g   +e++eetg+rLa ++++++vpfe+++ +akr+e++
  XP_027080754.1 327 FADKSIGRLTKGARCIHIIDFGIAYGFQWPCLIQGLSLRPGGPPKLRITGIELPQPGfqPTERVEETGRRLAYYCKKFNVPFEYHA-IAKRWETI 420
                     ********************************************************9999**************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +le+L++ +gE+++Vn+ ++l +++de+++ + +rd+vL+l+k+++P+ +v+   +  +n + F++rf eal+++s+lfd+le+++p+ +++r+ 
  XP_027080754.1 421 QLEDLKIGKGETIVVNCLYRLRHIPDETAEGSTARDDVLNLIKKINPDFFVHGVTNGTYNVPFFVTRFREALHHFSSLFDMLEKTVPQSDQDRML 515
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      E+e+lgr+ +nv+aceg++r+er et+++W+ r ++aGF+++pl+++++ ++++ ++  + + + v+e+ +++++gWk+r  +++S+W+
  XP_027080754.1 516 FEKEVLGRDSMNVIACEGSQRIERPETYKQWHVRNQRAGFSQLPLNQDIVREVRAKVKLQYHKDFLVDEDGHWILQGWKGRVFYALSCWK 605
                     *************************************************************888*************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    
MQRNCLMEFK YNCQSISASL EKNLAFECGM GSTCNFDVAG HSPSIGSSFP VNAAAQPEGD  60
SSLPVDHFDG VFKYLNQMLM EEDLEQRPCM YQDLLALQAA EKSFHDALTG ADFNVVANKE  120
EKKRDDFDNG SRRRRNHDRE DSEHGEGRSS KLFASHNEEG MPENEAAEEM YDKALLCPKR  180
NPGFYDDSST CDSDDPTPES KWWNYQKVGI KPESKRGRPR AGEKKIYIRE LVDLSSLLTQ  240
SAQAVADYDN KTAQELLNQI REHSSPCGDA TGRLAHYFAN ALEARISGMG TTLYTSFTSR  300
KVSAGDVLKA YQAYILACPF KRMSNIFADK SIGRLTKGAR CIHIIDFGIA YGFQWPCLIQ  360
GLSLRPGGPP KLRITGIELP QPGFQPTERV EETGRRLAYY CKKFNVPFEY HAIAKRWETI  420
QLEDLKIGKG ETIVVNCLYR LRHIPDETAE GSTARDDVLN LIKKINPDFF VHGVTNGTYN  480
VPFFVTRFRE ALHHFSSLFD MLEKTVPQSD QDRMLFEKEV LGRDSMNVIA CEGSQRIERP  540
ETYKQWHVRN QRAGFSQLPL NQDIVREVRA KVKLQYHKDF LVDEDGHWIL QGWKGRVFYA  600
LSCWKPIQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.11e-171GRAS family protein