PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027080754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 609aa MW: 69347.3 Da PI: 6.7487 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 373.5 | 2.8e-114 | 235 | 605 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lL++ A+av++ d++ aq+lL++++e++sp gd++ Rla+yf++AL+ar+++++++ly ++++++ s ++l+a++++ ++P+ ++s++ XP_027080754.1 235 SSLLTQSAQAVADYDNKTAQELLNQIREHSSPCGDATGRLAHYFANALEARISGMGTTLYTSFTSRKVS---AGDVLKAYQAYILACPFKRMSNI 326 689*********************************************************999999998...99********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 a + I + ++g++++HiiDf+i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g +e++eetg+rLa ++++++vpfe+++ +akr+e++ XP_027080754.1 327 FADKSIGRLTKGARCIHIIDFGIAYGFQWPCLIQGLSLRPGGPPKLRITGIELPQPGfqPTERVEETGRRLAYYCKKFNVPFEYHA-IAKRWETI 420 ********************************************************9999**************************.7******* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +le+L++ +gE+++Vn+ ++l +++de+++ + +rd+vL+l+k+++P+ +v+ + +n + F++rf eal+++s+lfd+le+++p+ +++r+ XP_027080754.1 421 QLEDLKIGKGETIVVNCLYRLRHIPDETAEGSTARDDVLNLIKKINPDFFVHGVTNGTYNVPFFVTRFREALHHFSSLFDMLEKTVPQSDQDRML 515 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+e+lgr+ +nv+aceg++r+er et+++W+ r ++aGF+++pl+++++ ++++ ++ + + + v+e+ +++++gWk+r +++S+W+ XP_027080754.1 516 FEKEVLGRDSMNVIACEGSQRIERPETYKQWHVRNQRAGFSQLPLNQDIVREVRAKVKLQYHKDFLVDEDGHWILQGWKGRVFYALSCWK 605 *************************************************************888*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence |
MQRNCLMEFK YNCQSISASL EKNLAFECGM GSTCNFDVAG HSPSIGSSFP VNAAAQPEGD 60 SSLPVDHFDG VFKYLNQMLM EEDLEQRPCM YQDLLALQAA EKSFHDALTG ADFNVVANKE 120 EKKRDDFDNG SRRRRNHDRE DSEHGEGRSS KLFASHNEEG MPENEAAEEM YDKALLCPKR 180 NPGFYDDSST CDSDDPTPES KWWNYQKVGI KPESKRGRPR AGEKKIYIRE LVDLSSLLTQ 240 SAQAVADYDN KTAQELLNQI REHSSPCGDA TGRLAHYFAN ALEARISGMG TTLYTSFTSR 300 KVSAGDVLKA YQAYILACPF KRMSNIFADK SIGRLTKGAR CIHIIDFGIA YGFQWPCLIQ 360 GLSLRPGGPP KLRITGIELP QPGFQPTERV EETGRRLAYY CKKFNVPFEY HAIAKRWETI 420 QLEDLKIGKG ETIVVNCLYR LRHIPDETAE GSTARDDVLN LIKKINPDFF VHGVTNGTYN 480 VPFFVTRFRE ALHHFSSLFD MLEKTVPQSD QDRMLFEKEV LGRDSMNVIA CEGSQRIERP 540 ETYKQWHVRN QRAGFSQLPL NQDIVREVRA KVKLQYHKDF LVDEDGHWIL QGWKGRVFYA 600 LSCWKPIQD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46600.1 | 1e-171 | GRAS family protein |