PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027080742.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 680aa    MW: 77157.8 Da    PI: 5.2135
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027080742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.56.9e-1153056761374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a +s d   a++lL+++++++sp+gdp++Rla++f++AL+ar+a+++  ly+al++++t+    +++l a++++ e++P+ ++s+
  XP_027080742.1 305 LRDLLTRCAQATASYDSWIANELLKQIRQHSSPYGDPTERLAHCFANALEARIAGTGAALYSALTAKRTP---AADVLRAYQAYMEICPFQRMSN 396
                     6899*************************************************************99999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN+ I + + + +r+HiiDf+i +G+QWp+++q ++ Rp+gpp+lRiTg++ p++g   +e++eetg+rL+++A+++ vpfefn+ +akr+++
  XP_027080742.1 397 AFANKSIGRLTCKVTRIHIIDFGILYGFQWPCFIQGISLRPGGPPKLRITGIDLPQPGfrPAERIEETGRRLENYAKRFSVPFEFNA-IAKRWDT 490
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L ++++E l+Vn+ ++l +++de+v  +s+rd+v++l+++++P+++v+   +  ++++ Fl+rf eal+++s+lfd++ea+lpre+ +r+
  XP_027080742.1 491 ITTEDLIIDKDEILVVNCLYRLRNVPDETVVPSSPRDAVMNLIRKINPDMFVHGVLNGMYSAPFFLTRFKEALYHFSSLFDMFEATLPREDLNRS 585
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + Ere++gr+++nv+aceg+er+er et+++W+ r ++aGF+++pl++++  ++++ ++  +++ + v+e+s+++++gWk+r ++++S+W+
  XP_027080742.1 586 MFEREVIGRDVMNVIACEGTERVERPETYKQWQVRNQRAGFRQLPLNKEIIREVRAKVKSSYNRHFLVDEDSDWMLQGWKGRVIYALSCWK 676
                     **************************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    
MDTLFRADGY SNFGNEFLQP DFDSQHSLSE GNLVNDCQLD HLLNNVTGPS NLSSLPDDIS  60
ATQCELEDCT VERDYFDGVF KYLQQMLMDE EDLVDKHCML QDCLAFQSAE KSFYEVLNEN  120
HPSSLGSSPS ALDNFAEIWP NDVNDPVVSH HTFQSNFQLT TPAESSDLSV HCLVDPCLSP  180
SQTLQSSTEM NSTVVAAGEK SSNDRSKKKN ARRDPEGGDH DKDERPSKQL ASHTDEIDNM  240
EDYDDALLCP ARNPNFYGES PARGGTECPE IEGRKKQQYV PPTTAKRGRP RASQKQDSIR  300
EVVDLRDLLT RCAQATASYD SWIANELLKQ IRQHSSPYGD PTERLAHCFA NALEARIAGT  360
GAALYSALTA KRTPAADVLR AYQAYMEICP FQRMSNAFAN KSIGRLTCKV TRIHIIDFGI  420
LYGFQWPCFI QGISLRPGGP PKLRITGIDL PQPGFRPAER IEETGRRLEN YAKRFSVPFE  480
FNAIAKRWDT ITTEDLIIDK DEILVVNCLY RLRNVPDETV VPSSPRDAVM NLIRKINPDM  540
FVHGVLNGMY SAPFFLTRFK EALYHFSSLF DMFEATLPRE DLNRSMFERE VIGRDVMNVI  600
ACEGTERVER PETYKQWQVR NQRAGFRQLP LNKEIIREVR AKVKSSYNRH FLVDEDSDWM  660
LQGWKGRVIY ALSCWKPAGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-179GRAS family protein