PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080700.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 558aa MW: 61886.9 Da PI: 5.835

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.1	4.1e-28	315	368	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++ XP_027080700.1 315 SKVDWTPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 368 6899**************.******************************96 PP
2	Myb_DNA-binding	44.6	3.2e-14	317	366	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av+qlG + +++I + m +g+t+ ++ s++qky+ XP_027080700.1 317 VDWTPELHKKFVQAVEQLGIDqaIPSRILELMKvEGLTRHNVASHLQKYR 366 57***********************************************7 PP
3	Response_reg	34.7	9.5e-13	24	129	2	109
EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 l+++ + + +r le+ +y +v + + eal + +k +++ ++ ++ +++G+ +k +++++ +lp i++++++ +++ +++ +Ga XP_027080700.1 24 LLIESDACSAVEMRLKLEEMDY-IVSIFCNENEALSAISNKSecFHVAIVEVNTQNSSGI--FKFLETAN-DLPTIMISDNNCISTMMKCIALGA 114 666666666667778889**.***********999999*********995..78888877.9******************* PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +fl Kp++ ++l + XP_027080700.1 115 VEFLQKPVSDDKLQN 129 ********99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MPAMVCTADE LLGWKDFPKG LKVLLIESDA CSAVEMRLKL EEMDYIVSIF CNENEALSAI 60 SNKSECFHVA IVEVNTQNSS GIFKFLETAN DLPTIMISDN NCISTMMKCI ALGAVEFLQK 120 PVSDDKLQNI WQHVVHKQAF NAGGKDVSEA LKPVKESLIS MLQLPFGNAE TGKQASVEAE 180 QENNQDLLSG CDKYPAPSTP QLKQGERSLD DGDCQDQANF SMEQDSAEQD GECKSVETTC 240 GNSIFECTAL GSPASGEDAV KEEHESTNCC RTEINTTTCY EGKDRPSNKT SNAAGLNRSS 300 AVRDTCGIKA SKKRSKVDWT PELHKKFVQA VEQLGIDQAI PSRILELMKV EGLTRHNVAS 360 HLQKYRMHRR HILPKENERR WPHPGGSAQR NYYPHKPVMA FPPYHPNHTI PGGQVYPAWI 420 PPGTYTGGIH IWGSPYYPGW QVPNESWYWK PYSVTHADAW GCPVMPQTVG SYPQFAQQTA 480 PDFQTTKEMQ YTGSTLLNPS DLHAAEEVID QVVKEAISKP WLPLPLGLKP PSTECVLNEL 540 SKQGISKIPP HTNAPNIR

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MPAMVCTADE LLGWKDFPKG LKVLLIESDA CSAVEMRLKL EEMDYIVSIF CNENEALSAI  60
SNKSECFHVA IVEVNTQNSS GIFKFLETAN DLPTIMISDN NCISTMMKCI ALGAVEFLQK  120
PVSDDKLQNI WQHVVHKQAF NAGGKDVSEA LKPVKESLIS MLQLPFGNAE TGKQASVEAE  180
QENNQDLLSG CDKYPAPSTP QLKQGERSLD DGDCQDQANF SMEQDSAEQD GECKSVETTC  240
GNSIFECTAL GSPASGEDAV KEEHESTNCC RTEINTTTCY EGKDRPSNKT SNAAGLNRSS  300
AVRDTCGIKA SKKRSKVDWT PELHKKFVQA VEQLGIDQAI PSRILELMKV EGLTRHNVAS  360
HLQKYRMHRR HILPKENERR WPHPGGSAQR NYYPHKPVMA FPPYHPNHTI PGGQVYPAWI  420
PPGTYTGGIH IWGSPYYPGW QVPNESWYWK PYSVTHADAW GCPVMPQTVG SYPQFAQQTA  480
PDFQTTKEMQ YTGSTLLNPS DLHAAEEVID QVVKEAISKP WLPLPLGLKP PSTECVLNEL  540
SKQGISKIPP HTNAPNIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-148	ARR-B family protein