PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080624.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 549aa MW: 59677.6 Da PI: 4.6319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.8e-11	364	406	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL +eY+k+L XP_027080624.1 364 MAERRRRKKLNDRLYMLRSIVPKiS------KMDRASILGDSIEYLKEL 406 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MVSTSYSPLS PQPFNLCSPV SFPASSITAE MLPSSNATAN TNSALWTQQP EEAEAASSLS 60 WSAPPRIAAA AAAQEETCKA HQEINAIAAA TAASTLSKSM LGTDWFINSA QDFKPTLSND 120 MAFPSNPSFE TTTHYQNLYS QPSSSSSSFF PPNSYFSSLF SLISSDPVEQ NGLLDNNSTN 180 FFLPSDNPYC SDSSSSVLLG NPESNLPALG LEGLQGFVGN GVLFPDKFNY VGLRPLEVLP 240 LGGVEQQPLP HPPTLFQKRA ALRNNYLAAD AEKGLMLEGD DGVKSEKKNE RNKRNDGEGE 300 LEDVDDISCL NYDSDELNLN SNVDRGTNES NDGAGDNWNV GDVNAVTNGD EKGKKKGPPA 360 KNLMAERRRR KKLNDRLYML RSIVPKISKM DRASILGDSI EYLKELLQRI NDLHHELEAT 420 PSGSLLEQTS SFHPLTPTLP TLPCCVKEEL NSSSLPSPKN NQPARVEVRL REGRAVNIHM 480 FCARRPGLLL STISALDNLG LDIQQAVISC FNGFALDVFR AEQCREGQDI LPEQVKAVLL 540 DSAGYHGVM

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MVSTSYSPLS PQPFNLCSPV SFPASSITAE MLPSSNATAN TNSALWTQQP EEAEAASSLS  60
WSAPPRIAAA AAAQEETCKA HQEINAIAAA TAASTLSKSM LGTDWFINSA QDFKPTLSND  120
MAFPSNPSFE TTTHYQNLYS QPSSSSSSFF PPNSYFSSLF SLISSDPVEQ NGLLDNNSTN  180
FFLPSDNPYC SDSSSSVLLG NPESNLPALG LEGLQGFVGN GVLFPDKFNY VGLRPLEVLP  240
LGGVEQQPLP HPPTLFQKRA ALRNNYLAAD AEKGLMLEGD DGVKSEKKNE RNKRNDGEGE  300
LEDVDDISCL NYDSDELNLN SNVDRGTNES NDGAGDNWNV GDVNAVTNGD EKGKKKGPPA  360
KNLMAERRRR KKLNDRLYML RSIVPKISKM DRASILGDSI EYLKELLQRI NDLHHELEAT  420
PSGSLLEQTS SFHPLTPTLP TLPCCVKEEL NSSSLPSPKN NQPARVEVRL REGRAVNIHM  480
FCARRPGLLL STISALDNLG LDIQQAVISC FNGFALDVFR AEQCREGQDI LPEQVKAVLL  540
DSAGYHGVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	354	372	KKKGPPAKNLMAERRRRKK
2	366	373	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-97	bHLH family protein