PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027079758.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NF-YA | ||||||||
Protein Properties | Length: 322aa MW: 35682.4 Da PI: 9.2693 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 92 | 7.3e-29 | 171 | 225 | 3 | 58 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+ VNaKQy++Il+RR Rakle+++k+ k rkpylheSRhkhA+rRpRgsgGrF XP_027079758.1 171 PVLVNAKQYRAILRRRRIRAKLEAQNKM-LKFRKPYLHESRHKHAVRRPRGSGGRF 225 99**************************.9*************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence |
MQSSCNKDGQ SLAPFLITCS SLWNSTEQSK FSPSKSVITG PESSNNEFFH VKQSDLLFQE 60 LDSLSTLSTC QSQYVMADAA RNSTSGDETH GRRAEQYQRS PLLCVSADFT VSQVQLDYNK 120 SLACIPFPSS ESYFGGLVAA YGPNALVCPP MVGMLHARVP LPPLQCAEGM PVLVNAKQYR 180 AILRRRRIRA KLEAQNKMLK FRKPYLHESR HKHAVRRPRG SGGRFLNTKD IKPSKLSSPS 240 YTEDAPLKML AGDISGSEAR LSESCSWAAS TPSGSDVTSI FNGDDIFQHP ENQVSASSFH 300 MGMACRKRFN TFRSWQPAFL IH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 219 | RHKHAVRRPR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 6e-40 | NF-YA family protein |