PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027079757.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 331aa    MW: 36627.6 Da    PI: 9.0163
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027079757.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA927.6e-29180234358
       CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     p+ VNaKQy++Il+RR  Rakle+++k+  k rkpylheSRhkhA+rRpRgsgGrF
  XP_027079757.1 180 PVLVNAKQYRAILRRRRIRAKLEAQNKM-LKFRKPYLHESRHKHAVRRPRGSGGRF 234
                     99**************************.9*************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MQSSCNKDGQ SLAPFLITCS SLWNSTEQSK FSPSKSVITG PESSNNEFFH VKQSDLLFQE  60
LDSLSTLSTC QSQYVMADAA RNSTCMHTIG SQCAGDETHG RRAEQYQRSP LLCVSADFTV  120
SQVQLDYNKS LACIPFPSSE SYFGGLVAAY GPNALVCPPM VGMLHARVPL PPLQCAEGMP  180
VLVNAKQYRA ILRRRRIRAK LEAQNKMLKF RKPYLHESRH KHAVRRPRGS GGRFLNTKDI  240
KPSKLSSPSY TEDAPLKMLA GDISGSEARL SESCSWAAST PSGSDVTSIF NGDDIFQHPE  300
NQVSASSFHM GMACRKRFNT FRSWQPAFLI H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219228RHKHAVRRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.17e-40NF-YA family protein