PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027079709.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 470aa    MW: 52891.8 Da    PI: 6.2033
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027079709.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS472.81.8e-144464671374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v++g+le+a+ +L ++s+la+pdgd+mqR+a+yfteALa r+++++++lykal++++ s   +see+ ++k+f+e +P+lk+++
  XP_027079709.1  46 LIHLLLTCANHVATGSLENANMALDQISHLATPDGDTMQRIASYFTEALADRVLKTWPGLYKALHSTRIS--VVSEEVLVRKMFFEFFPFLKVAF 138
                     689*************************************************************999887..699******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege++vHiiD+++s+++QW aLlq L++Rpegpp+lRiTgv++    +ke l ++++ L++ Ae+l++pf+fn+ ++++le+l+
  XP_027079709.1 139 VITNQAIIEAMEGEKMVHIIDLNASEPAQWRALLQDLSARPEGPPHLRITGVHQ----QKEILDQMAHILSEDAEKLDIPFQFNP-IVSKLENLD 228
                     ******************************************************....9**************************.7999***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll........................................................desvsles..erdev 227
                     +e+Lrvk+gEala+++vlqlh ll                                                            s++   + d++
  XP_027079709.1 229 VEKLRVKTGEALAISSVLQLHALLatdeemrkkspmvpkssnghhlqrvlqmnqgtlgellekdlvngyspssdsassspL---SSNAsaKLDSF 320
                     ***************************************************************************885541...3222446899* PP

            GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                     L++++slsPk++vv+eq+a+hn+++++er++e+l++y+alfd+le++lpr+s er kvE++l+g+ei+n++aceg er+erhe+lekW +r++ a
  XP_027079709.1 321 LNALWSLSPKIMVVAEQDANHNGANLMERLSESLYFYAALFDCLESTLPRTSVERLKVEKMLFGEEIKNIIACEGVERKERHEKLEKWIQRFDLA 415
                     *********************************************************************************************** PP

            GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     GF++v+ls++a+ qak+ll++ + dgy+++ee+g++v++W+dr+L+svSaWr
  XP_027079709.1 416 GFGNVALSYYAMLQAKRLLQNRSCDGYKIKEENGCIVICWQDRALFSVSAWR 467
                     ***************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MFQDDGSSSV TSSPLQMFPM MSLSPGLGSP YQWLKELKSE ERGLYLIHLL LTCANHVATG  60
SLENANMALD QISHLATPDG DTMQRIASYF TEALADRVLK TWPGLYKALH STRISVVSEE  120
VLVRKMFFEF FPFLKVAFVI TNQAIIEAME GEKMVHIIDL NASEPAQWRA LLQDLSARPE  180
GPPHLRITGV HQQKEILDQM AHILSEDAEK LDIPFQFNPI VSKLENLDVE KLRVKTGEAL  240
AISSVLQLHA LLATDEEMRK KSPMVPKSSN GHHLQRVLQM NQGTLGELLE KDLVNGYSPS  300
SDSASSSPLS SNASAKLDSF LNALWSLSPK IMVVAEQDAN HNGANLMERL SESLYFYAAL  360
FDCLESTLPR TSVERLKVEK MLFGEEIKNI IACEGVERKE RHEKLEKWIQ RFDLAGFGNV  420
ALSYYAMLQA KRLLQNRSCD GYKIKEENGC IVICWQDRAL FSVSAWRCRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein