PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027079616.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 401aa MW: 44753 Da PI: 8.9154

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027079616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4.1e-32	231	284	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_027079616.1 231 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 284 9****************************************************7 PP
2	Myb_DNA-binding	48.4	2.1e-15	232	283	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWTt ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ XP_027079616.1 232 RMRWTTTLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 283 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MELFPAQPDL SLQISPPNSK PSSGWRRTTE DMIDLGFCKR ALDSRNSSIS SSMAAKPDTS 60 NFFDLSLSNN QRMISVSDHH HQPSSNNSHY NLIQNSSSTS TTNNNLIHSF QQSQQFPLHH 120 QHQLHHHHLL QHQQHQVGGG GGGLNHPEFG FLRPIRGIPV YQNPPPFPLF NPILQSLDAS 180 TTSCGIPSPT STTTSSSNPT CFQSQGGCGG GGLMRSRFSS RFPAKRSMRA PRMRWTTTLH 240 ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKTTDR AAPSSGQSDI 300 YENGSSGDNS EDLMFEVQNS RKPELSVQQG RQNIQQDKDL HGLWSNSSSR EAWLHGKMRD 360 SLGNIPSLEV LNATNLEYWP FHFLFLPKSF LMLVYALVTS H

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MELFPAQPDL SLQISPPNSK PSSGWRRTTE DMIDLGFCKR ALDSRNSSIS SSMAAKPDTS  60
NFFDLSLSNN QRMISVSDHH HQPSSNNSHY NLIQNSSSTS TTNNNLIHSF QQSQQFPLHH  120
QHQLHHHHLL QHQQHQVGGG GGGLNHPEFG FLRPIRGIPV YQNPPPFPLF NPILQSLDAS  180
TTSCGIPSPT STTTSSSNPT CFQSQGGCGG GGLMRSRFSS RFPAKRSMRA PRMRWTTTLH  240
ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKTTDR AAPSSGQSDI  300
YENGSSGDNS EDLMFEVQNS RKPELSVQQG RQNIQQDKDL HGLWSNSSSR EAWLHGKMRD  360
SLGNIPSLEV LNATNLEYWP FHFLFLPKSF LMLVYALVTS H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	3e-64	G2-like family protein