PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027079541.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 412aa    MW: 44695.7 Da    PI: 7.4271
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027079541.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.7e-19333367135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  XP_027079541.1 333 CSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRL 367
                     *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MLYRTHHHPF LFPLNPSFTS SSLSSSASSS PHPFPLPLPL PPTAPPHSFS PTSSPQVVVA  60
REEGMEGALK SSFRPDVAPL KTNPHSHHLH QHQQPAFSDD MLAVNNNGQN MENDFFVDDL  120
LDFSNAPAED PEEHKPHEKL DENESATTSI TTKSNVTLSP KEEFGSLPDS ALDVPADDLE  180
SLEWLSHFVE DSFSEYSLTC PVSKFPPAPA KARSEPEAPV ETQRSFTTPV QTKARTKRAR  240
TGGRVWSLVG SPSLTESSSS STSSSSTTTS SSSPQPCNPW LAYSSPSQCQ TQQTAESLVG  300
KLPVKKQKKK PMGLDSAGGG GGYSGGGQQP RRCSHCGVQK TPQWRAGPLG AKTLCNACGV  360
RYKSGRLLPE YRPACSPTFS SELHSNNHRK VLEMRRKKEV ETGLTPPPVQ SF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304311VKKQKKKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-43GATA family protein