PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027079202.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 245aa    MW: 26765.8 Da    PI: 10.4615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027079202.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.25.8e-08152192954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  XP_027079202.1 152 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAAHYLKFL 192
                     699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MKIELLKSAS QNQLGSPTTG MHLGKFYQSS ATTNYLYGIS EPPELGSSSK SAASTDPIFL  60
NPYIVASTSS ISLAGNPVRD SGSIASVAVP EFTPANGSSL SNPLQKRSSM DAMREMIFRI  120
AMMQPIHIDP ESVKPPRRKN VKMSKDPQSV AARHRRERIS EKIRILQRLV PGGTKMDTAS  180
MLDEAAHYLK FLKKQVQSLE QTANNRPLNN AGIPMMMATS AVDYSNLVKG CQHQSVRLGS  240
IQMLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-47bHLH family protein