PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027079004.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 837aa    MW: 93186.8 Da    PI: 6.4789
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027079004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.9e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_027079004.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQTPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFI--WNE 217
                     99*****************************7655544..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_027079004.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp118.84.2e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  XP_027079004.1 253 AAHAAATNSCFTIFYNPRASPSEFVIPLSKYFKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    
MKLSTSGLGQ QAHEGEKKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPS LPAQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YLPVELGTPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ TPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLIAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTIFYNPR ASPSEFVIPL SKYFKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWYPG ASSFQDASNE AVNGMTWLRG ETGEQGLHSL NFPSVGMLPW  420
MQQRIDPSML RNDLNQQYQA MLALQNFGSG DLLKQQMVQF QPPVQYLQHT GCHNTLLQHQ  480
QVIQQGVPPH ILPPQTQMLS ENLNRAQAQQ VNNQSEEQQP HHPFQEAYVI QHEQLQQRQS  540
SNIPSPSFSK TDFADSNTKF SASIAPSSMQ NVLGSLCSEG STSLLNFSRT TQTMLNEQPP  600
QQSWVSKYSH GQVNACSSAA SLPPYPGKDG PSEQEACGLD AQNQAIFGAN IDSAALLLPT  660
TVSSVGTSSI DAGVSSMPLG DSGFQNPLYG FVHDSSELLH GTGQDSPTRT RTFVKVHKFG  720
CVGRSLDISR FNSYHELRQE LGQMYGIEGL LEDPQRSGWQ LVFVDRENDV LLLGDDPWEA  780
FVNNVWYIKI LSPEEVQKLG KQEGESLSRI AAERMNSSSG DGRDMVARFP SLGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein