PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027078712.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 413aa MW: 47220.2 Da PI: 10.587

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027078712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.2	1.2e-12	349	373	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C++ ++C+FaHg XP_027078712.1 349 KTELCNKWQETGSCPFAGNCRFAHG 373 9***********************8 PP
2	zf-CCCH	18.9	2.7e-06	386	411	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr ++ +C+yG rC+F H+ XP_027078712.1 386 YKTEVCRMVLARDICPYGHRCHFRHS 411 9********88********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MKLLANPFNG SLKRQWRRRK NYHRINGSRR NVKIVKFGGQ GEKRAWKIRA IPKLRLKFAS 60 PLKLWTKFKN AYMNMMLRLA GNVGAMNSGN DFAGKRIPEA RPVPVTYKNS EFENRLIYEI 120 YKSLAVSMEM DSRTGTPHLS LNFRALPPSY DTMTDEVVTP DRCHSDSSLI LEYQQLYNRY 180 AFCLANLRES IKEVQALGQD NESLRLANAD LVHRLSLLSR ATIHNCLLSD FNRLRISGNA 240 TPSPRLYSRE ASPAPAPDVI QQKRFQRRHL AERVSLPKSI SIRSAGYLKF KPESAGKYEA 300 PTTQASSPNR VNSPPLPDSE KARQRVYVAG GGREEEASQF EVYNQGMSKT ELCNKWQETG 360 SCPFAGNCRF AHGIMELRPV IRHPRYKTEV CRMVLARDIC PYGHRCHFRH SLS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MKLLANPFNG SLKRQWRRRK NYHRINGSRR NVKIVKFGGQ GEKRAWKIRA IPKLRLKFAS  60
PLKLWTKFKN AYMNMMLRLA GNVGAMNSGN DFAGKRIPEA RPVPVTYKNS EFENRLIYEI  120
YKSLAVSMEM DSRTGTPHLS LNFRALPPSY DTMTDEVVTP DRCHSDSSLI LEYQQLYNRY  180
AFCLANLRES IKEVQALGQD NESLRLANAD LVHRLSLLSR ATIHNCLLSD FNRLRISGNA  240
TPSPRLYSRE ASPAPAPDVI QQKRFQRRHL AERVSLPKSI SIRSAGYLKF KPESAGKYEA  300
PTTQASSPNR VNSPPLPDSE KARQRVYVAG GGREEEASQF EVYNQGMSKT ELCNKWQETG  360
SCPFAGNCRF AHGIMELRPV IRHPRYKTEV CRMVLARDIC PYGHRCHFRH SLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	6e-60	C3H family protein