PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027078649.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family TCP
Protein Properties Length: 445aa    MW: 49040.5 Da    PI: 10.4763
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027078649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.52.3e-421012462133
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec....eaesssssasnsssg. 88 
                     ++k+drhski+T++g+RdRRvRls+++a++fF Lqd LG+dk+s+t++WLl+++k+aikel +    + +++ +c    +++ ++++a++++++ 
  XP_027078649.1 101 PAKRDRHSKICTAQGPRDRRVRLSMDIARKFFGLQDLLGYDKASQTLDWLLTKSKAAIKELLDMkdtDHDANAKClcfwSEAGNVVAAGTNTKEd 195
                     689**********************************************************9996654444455666663333333333222223 PP

             TCP  89 ......kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                           +++k ++ ++ k++k  a  ++l kesrakarararertrek +++
  XP_027078649.1 196 eskktaSKRKRKKtNQAKNPKMVA-LSKLVKESRAKARARARERTREKISLR 246
                     444443222223213333333333.677788*****************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    
MFSSGSEITH FAQLSPYLYP PSSTTSSSTS STLGLNGNNE AFLLLHHQDL LSHYLAVAPM  60
IETANTMTTP TSTKKTTTAS TNNPQISSAT PLHTRYRRKQ PAKRDRHSKI CTAQGPRDRR  120
VRLSMDIARK FFGLQDLLGY DKASQTLDWL LTKSKAAIKE LLDMKDTDHD ANAKCLCFWS  180
EAGNVVAAGT NTKEDESKKT ASKRKRKKTN QAKNPKMVAL SKLVKESRAK ARARARERTR  240
EKISLRKLSI DQKSPDLIPL SPDHTKPAAW SQIGTCKTKD SSMLGTISSL KLNASIQEDD  300
GFFCFNPRAG AIGAEEISQD SPRIIRKPKP SSILGFQRNL ILSKEASPNF DSWSLVTNGN  360
WGISSSMTSS SLCAVTNTSS TKVLQFCGKP SEDKSNNNQV PCGRQIHRST VDLDGSARYC  420
AANSTAVVES AGRTRNCRRF FSYNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204208RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-26TCP family protein