PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027078238.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CAMTA

Protein Properties

Length: 1108aa MW: 123385 Da PI: 5.7817

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027078238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182	6.7e-57	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 l+ ++rwl++ ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+e++++fqr XP_027078238.1 20 LEAQHRWLRPAEICEILRNYQKFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEDDENFQR 114 5679***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Leeel++ivlvhy+evk XP_027078238.1 115 RSYWMLEEELSHIVLVHYREVK 136 *****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1108 aa Download sequence
MAESRRYALG AQLDIEQILL EAQHRWLRPA EICEILRNYQ KFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEDDE NFQRRSYWML 120 EEELSHIVLV HYREVKGNRT NYNRVREIGE AIPNAQESED DAPNSEFNSN STSKFHSYGY 180 QVTSQITDTV SLNSAQASEY EDAESAYTQQ STSGFHTFLE IQPPVLQKAE GRPVPYYAGS 240 TLNGYQGQFS GVPDVNFASI PQGEKDQSTT GAGLSYMPEG HLDFPSWGNV LDSRNGGYQS 300 VNFQPSVSAT QHGTINVMPG GMNDILGQAL TDGLGKRQDS DAHVGGLEQW QTSEVDASSL 360 SKCHMDQKLN LPSGRNLSTS FNEVNNAELP NSSETFSMHK SPIETDVQVD LIRADSGISA 420 KSAFNGNLGI EGKAEYPTLR QPLLDGVLKE GLKKLDSFDR WMSRELGDVN ESHIQSSSGT 480 YWETVGNDDG LGDSNIAPQV HIDSYMMSPS IAQDQLFSII DFSPNWAYSG SEMKVLIMGR 540 FLKSQEELGK YKWACMFGEV EVQAEVIANG ALRCLTPLHE AGRVPFYVTC SNRLACSEVR 600 EFEFRVSNVK DDDVALLTSG IIDECHLLTR FGKLLTTGSH NYQDTVPGIM DQLSTLRSKI 660 ESLVINDNNE WEGMLNLTLE EFSVDKVKDQ LLVKLLKDRL YLWLRQKVAE GGKGPSMLDE 720 GGQGVLHLAA ALGYDWALSP TIAAGVSVNF RDLNGWTALH WAASFGRERT VALLISLGAS 780 PGALTDPTPK YPSGIPPAEL ASNNGHKGIA GYLAESTLSS HLSSLKVKDD KEGYKDDKAD 840 YNGEGSGANV VQTASERTAT PIADGDLPVL SLKDSLAAVR NATQAHARIH QVFRVQSFQR 900 KQQNEYGSSG LGISDERALS LLSAKTKRAG QRDEPVHAAA TQIQNKFRSW KGRKEFLQKR 960 QQIIKIQAHV RGHQVRKNYR SIIWSVGILE KVILRWRRKG SGLRGFKPEA PPVETSIQGS 1020 SSKEDDYDFL KEGRKQTENQ LQKALARVKS MVQYPEARDQ YRRLLNVVSD MQETKAVYDR 1080 ALDNSDEAAD FDEDLIDLDA LLDDDPLM

Sequence ? help Back to Top

Protein Sequence Length: 1108 aa Download sequence

MAESRRYALG AQLDIEQILL EAQHRWLRPA EICEILRNYQ KFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEDDE NFQRRSYWML  120
EEELSHIVLV HYREVKGNRT NYNRVREIGE AIPNAQESED DAPNSEFNSN STSKFHSYGY  180
QVTSQITDTV SLNSAQASEY EDAESAYTQQ STSGFHTFLE IQPPVLQKAE GRPVPYYAGS  240
TLNGYQGQFS GVPDVNFASI PQGEKDQSTT GAGLSYMPEG HLDFPSWGNV LDSRNGGYQS  300
VNFQPSVSAT QHGTINVMPG GMNDILGQAL TDGLGKRQDS DAHVGGLEQW QTSEVDASSL  360
SKCHMDQKLN LPSGRNLSTS FNEVNNAELP NSSETFSMHK SPIETDVQVD LIRADSGISA  420
KSAFNGNLGI EGKAEYPTLR QPLLDGVLKE GLKKLDSFDR WMSRELGDVN ESHIQSSSGT  480
YWETVGNDDG LGDSNIAPQV HIDSYMMSPS IAQDQLFSII DFSPNWAYSG SEMKVLIMGR  540
FLKSQEELGK YKWACMFGEV EVQAEVIANG ALRCLTPLHE AGRVPFYVTC SNRLACSEVR  600
EFEFRVSNVK DDDVALLTSG IIDECHLLTR FGKLLTTGSH NYQDTVPGIM DQLSTLRSKI  660
ESLVINDNNE WEGMLNLTLE EFSVDKVKDQ LLVKLLKDRL YLWLRQKVAE GGKGPSMLDE  720
GGQGVLHLAA ALGYDWALSP TIAAGVSVNF RDLNGWTALH WAASFGRERT VALLISLGAS  780
PGALTDPTPK YPSGIPPAEL ASNNGHKGIA GYLAESTLSS HLSSLKVKDD KEGYKDDKAD  840
YNGEGSGANV VQTASERTAT PIADGDLPVL SLKDSLAAVR NATQAHARIH QVFRVQSFQR  900
KQQNEYGSSG LGISDERALS LLSAKTKRAG QRDEPVHAAA TQIQNKFRSW KGRKEFLQKR  960
QQIIKIQAHV RGHQVRKNYR SIIWSVGILE KVILRWRRKG SGLRGFKPEA PPVETSIQGS  1020
SSKEDDYDFL KEGRKQTENQ LQKALARVKS MVQYPEARDQ YRRLLNVVSD MQETKAVYDR  1080
ALDNSDEAAD FDEDLIDLDA LLDDDPLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein