PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027078230.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 397aa MW: 44586.4 Da PI: 8.0148

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027078230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.6	1.6e-29	259	314	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+++LH++Fv+a+ +LGG++ AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ XP_027078230.1 259 KQRRCWSHDLHQNFVKALFELGGAQAATPKHIREIMQVDGLTNDEVKSHLQKYRLH 314 79****************************************************97 PP
2	Myb_DNA-binding	35.1	3e-11	261	312	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ ++++ +v+a +lGg t+k I + m+ g+t ++ks++qky+ XP_027078230.1 261 RRCWSHDLHQNFVKALFELGGAqaaTPKHIREIMQvDGLTNDEVKSHLQKYR 312 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MKFDSKEFRL LDLNSSGFVP KSISDLLAEV SMIPDIPLKL SKLNDYVCVL EQEMKKIDGF 60 RRELPLCMLL LNDAIWKLKE EVVKLKKREV ETVVMEEFMP LKGNSDREDE RPKRKSADWT 120 DKKTWMSSAQ LWTTPIQYEN GFDTVKIQDA FFLHQARHQE RSDGAARWSL SDQARSFNKK 180 LGGAFLPFKK PGGAVVTKTE VEEEDYPLNG LSLSMPALAE VGSDDLTNSK GKHVGVASDD 240 GTVVLSEGGS SSQTTQGKKQ RRCWSHDLHQ NFVKALFELG GAQAATPKHI REIMQVDGLT 300 NDEVKSHLQK YRLHIRKLMP SSSTSASPNY EWLRRGERSY LRKPSAKQSA SPEGPLHLAG 360 GGSAKGASVT GGESMEEEED RRSESCSWKD RHQKPTD

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MKFDSKEFRL LDLNSSGFVP KSISDLLAEV SMIPDIPLKL SKLNDYVCVL EQEMKKIDGF  60
RRELPLCMLL LNDAIWKLKE EVVKLKKREV ETVVMEEFMP LKGNSDREDE RPKRKSADWT  120
DKKTWMSSAQ LWTTPIQYEN GFDTVKIQDA FFLHQARHQE RSDGAARWSL SDQARSFNKK  180
LGGAFLPFKK PGGAVVTKTE VEEEDYPLNG LSLSMPALAE VGSDDLTNSK GKHVGVASDD  240
GTVVLSEGGS SSQTTQGKKQ RRCWSHDLHQ NFVKALFELG GAQAATPKHI REIMQVDGLT  300
NDEVKSHLQK YRLHIRKLMP SSSTSASPNY EWLRRGERSY LRKPSAKQSA SPEGPLHLAG  360
GGSAKGASVT GGESMEEEED RRSESCSWKD RHQKPTD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	7e-46	G2-like family protein