PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027078181.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 408aa MW: 44139.5 Da PI: 6.4022

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027078181.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.5	7.8e-16	152	198	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq XP_027078181.1 152 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 198 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MANLYDTANC SSSSPDDPDD FSLFLHQIML RSRTSSSTSF MAQKGNEVQS YPGNQGCGLH 60 LVSGTERISI PEAPSAGLQH WSYGGGFTSP GLGSFCQESG VNVSSSSVSV ATMDNDLNDY 120 DCESEGLEVL EEAMVKPTAP YNASKRSRAA EVHNLSEKRR RSRINEKMKA LQNLIPNSNK 180 TDKASMLDEA IEYLKQLQLQ VQLLTVRNGL SLYPMCLPGV LPSNQVSETR TGYEGNRSLD 240 MSLASALPLK PVTPTNILFN LPDNFKKAKQ ASDVNQSKLS DSEDAFAPAS IIHGNHRPIQ 300 FPLPGTSKKG TCMGQKSPNQ QANQDLSRRK SVAKHIGAEA TGSAALNALP SGLEQNILEA 360 WVLGRDQSGG RLLKNMECKN LLLSQVDGTQ TGPSPLVDDS IKAERCDF

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MANLYDTANC SSSSPDDPDD FSLFLHQIML RSRTSSSTSF MAQKGNEVQS YPGNQGCGLH  60
LVSGTERISI PEAPSAGLQH WSYGGGFTSP GLGSFCQESG VNVSSSSVSV ATMDNDLNDY  120
DCESEGLEVL EEAMVKPTAP YNASKRSRAA EVHNLSEKRR RSRINEKMKA LQNLIPNSNK  180
TDKASMLDEA IEYLKQLQLQ VQLLTVRNGL SLYPMCLPGV LPSNQVSETR TGYEGNRSLD  240
MSLASALPLK PVTPTNILFN LPDNFKKAKQ ASDVNQSKLS DSEDAFAPAS IIHGNHRPIQ  300
FPLPGTSKKG TCMGQKSPNQ QANQDLSRRK SVAKHIGAEA TGSAALNALP SGLEQNILEA  360
WVLGRDQSGG RLLKNMECKN LLLSQVDGTQ TGPSPLVDDS IKAERCDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	1e-33	bHLH family protein