PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027078107.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25373.9 Da    PI: 9.5233
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027078107.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-271058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ri+n++ rqvtfskRrng+lKKA+EL vLCdaev v+ifsst klyey+
  XP_027078107.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAVLCDAEVGVVIFSSTSKLYEYA 58
                    8***********************************************8 PP

2K-box80.54e-27841691297
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     ++ + +q+e++ L+++++nLq+ +R+l+Ge+L  Ls+k+Lq Le+qLe sl+ iR kK+++l+++i+el +k   +++en +L kk
  XP_027078107.1  84 SEVKFWQREATILRQQLHNLQEIHRQLMGEELYGLSVKDLQGLENQLEMSLRGIRMKKEQILTDEIRELHRKGCLIHQENAELYKK 169
                     67899******************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAVLCD AEVGVVIFSS TSKLYEYANT  60
SMKSVLERYS KAKEERHQLL SPLSEVKFWQ REATILRQQL HNLQEIHRQL MGEELYGLSV  120
KDLQGLENQL EMSLRGIRMK KEQILTDEIR ELHRKGCLIH QENAELYKKA YSTSNSNATH  180
GNTITPYGFA ITEEQHAPIH LQLSQPESQN FVTSEGTSES R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-95MIKC_MADS family protein