PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027078051.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 436aa    MW: 48836.7 Da    PI: 6.1912
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027078051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3013e-92334332373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalkl..fsevsPilkf 93 
                     ++lL++cA+a++s+d++l+q++L+ l+++a pdgd++qRl+  f++AL ar a+s++ +l +a++  +t+    ++++++ +l  f++++P+++f
  XP_027078051.1  33 EQLLVHCANAIESNDATLTQQILWVLNNIAPPDGDSNQRLTCGFLRALIARAANSGNcKLLSAMANVNTNMGIDTHKFSIIELasFVDLTPWHRF 127
                     79***************************************************94432566666555555433444444444456********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl... 181
                     ++ +aN aIleaveg + +Hi+D+++++++Q p+L++a+a+R eg p +++T+    + g       ++ee+g++L +fA++ +v +ef+v+   
  XP_027078051.1 128 GFTAANTAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIATRLEGHPLVKLTVACITD-GippmIDLSYEELGSKLINFARSRNVVLEFRVIpst 221
                     ****************************************************987744.348889999***********************9887 PP

            GRAS 182 ....vakrledleleeL.rvkpgEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                          ++ +e+l+++++ r ++gEal++n++++lh+++                  es + +s r+ +Lk ++sl+P+v+v+v+++ad++s++++
  XP_027078051.1 222 sadgFSSLFEQLRMQQIvRADNGEALVINCHMMLHYIPeetlsvvsssttlsshqLESSQNASLRTMFLKRLRSLEPTVLVLVDEDADLTSNNLV 316
                     5444444555555555544445******************************98856666666899***************************** PP

            GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                      r+ +a++y +  +d++++ lpr s++r+++E+  + ++i+nv+a+eg +r+er e +++W +r++++ Fk v++se+a +++k++l +++  g+
  XP_027078051.1 317 SRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-ICWKIENVIAHEGLQRIERLEPKNRWVQRMRSSSFKGVSFSEDAFSEVKSMLDEHA-AGW 409
                     **********************************.********************************************************.899 PP

            GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373
                      ++ e++ lvl+Wk++++v+++aW
  XP_027078051.1 410 GLKREEEDLVLTWKGHNVVFATAW 433
                     9*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    
MNKNQIHRTR PWPGFPTSKS SLGGSFGDAN CMEQLLVHCA NAIESNDATL TQQILWVLNN  60
IAPPDGDSNQ RLTCGFLRAL IARAANSGNC KLLSAMANVN TNMGIDTHKF SIIELASFVD  120
LTPWHRFGFT AANTAILEAV EGYSVIHIVD LSLTHCMQIP TLIDAIATRL EGHPLVKLTV  180
ACITDGIPPM IDLSYEELGS KLINFARSRN VVLEFRVIPS TSADGFSSLF EQLRMQQIVR  240
ADNGEALVIN CHMMLHYIPE ETLSVVSSST TLSSHQLESS QNASLRTMFL KRLRSLEPTV  300
LVLVDEDADL TSNNLVSRLR SAFNYLWIPY DTVDTFLPRG SKQRQWYEAD ICWKIENVIA  360
HEGLQRIERL EPKNRWVQRM RSSSFKGVSF SEDAFSEVKS MLDEHAAGWG LKREEEDLVL  420
TWKGHNVVFA TAWVPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein