PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077794.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 257aa    MW: 29114.9 Da    PI: 6.6285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077794.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08129169954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_027077794.1 129 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 169
                     699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MDINPQKLTA WEPSMPVENH MAHHDHIFFE TLWPNYVFEN HQIPSSSSQH ISTSAILSSG  60
QIDHHHHDHP HQQMEEDQAE EDPEEELGAM KEMMFKIAAM QPVDIDPATI RKPKRRNVRI  120
SDDPQSVAAR HRRERISEKI RILQRLVPGG TKMDTASMLD EAIRYVKFLK RQIRLLQANN  180
PPPIGVPACP PLRTWSNNGL DPVTAPTATP ISPIVGCNGN GDPMSFNNEV NSINTLTSYV  240
ARSSEFTSTE WKVKHIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.11e-47bHLH family protein