PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077529.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 1425aa    MW: 156688 Da    PI: 6.3539
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.5e-0614021425226
                      -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                      +++ C+ f+++G+Ck G++C + H+
  XP_027077529.1 1402 GQRVCK-FYESGHCKKGASCDYLHP 1425
                      6799**.8899*************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1425 aa     Download sequence    
MDGGDSSSAL HAPRAETTVS SQSFDQCGLV REMDDSQLVG VPLAVAGDAA VPVKAGEPQQ  60
VPPSAVQLNK TTLGAVGQVM EKRKRGRPPK GHAALAPAPA PPKPPPPKRN KEEEDVCFIC  120
FDGGSLVLCD RKGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSVCQKAA HYMCYTCTYS  180
LCKGCTKDAE YVCVRGNKGF CTTCMRTIML IENKDLGNSE VVQVDFDDKT SWEYLFKVYW  240
LYLKSNLSLT INELMQAKNP WRGLAMMDYK QQLPARNHFA NGCMVPISDH SVHLESKVPK  300
EQPELLNHDS FLNTEKINSD KVTNLAECKE WASKELLELV AHVRNGDTSM LSQFDVQALL  360
LEYIKRNNLR DPRRKSQIIC DLRLKNLFGK PRVGHIEMLK LLEYHFLIKE DDQNNAFIPA  420
GIVGSVGGNV GVDQKNSLMV NQGKKRKTRR KGEEKTPQTN LDDYAAIDLH NINLIYLRRN  480
LLENLLGDEE KFHDKVVGSV VRIRVSCNDQ KQDIYRLVQV VGTSKASMAY KLGDKMTHVM  540
LEVLNLNKKE TTSIEAISNQ EFSQEECRRL RQSIRCGLVK HWTVGEIQTK AFALQAVKLN  600
DVLEAEILRL NHLRDRANEK GHKKQLRECI EKLQLLKTPE ERQRRLTEIP KVHADPKMNP  660
NYKSEEDIAG ELLKSKISSF NKNESQSISP KSRAKEDGMN RSQQSRQKRD ARGRSGPAKN  720
EMQVPVSGSE SGSGNQQVVR FGSETSSATL PTGSSTPANT SETEKIWHYR DPNGRIQGPF  780
AMVQLRKWST TGYFPADMRI WTINELDESV LLIDALNEFF HKDYRSLHNV SRPQENGPAS  840
DNGTLHSFNP DQTFVAPLHQ ERGYGIEELK SVLDHENQSP HETPTDQATG VQCNEKSSSS  900
QSYVGQSSGQ NCRSVPLNLD LNRKDCNSSL ASVTTPSDSA EQQGDIDILD LPSPTPKTSK  960
SNLEGQDVEK QESGFDGHVQ GSEKSDLPSP SPKPIDDDVP DPTPEPMDED LAGTTYPPKN  1020
EVLPSPSPIP TGGDDREQID KTNQSPLPKV SVPDSGPGWN STSGLRVGGA QLQKIADEWD  1080
GYSPTDPKPS VQEWDTSLAP VASLKPPEVL GDHVTSGSIN NTTQLVHASP CQPASNISSW  1140
QAIVNEPIEF STLAEESVSD LLAEVDAMES QSGLASPTSG MKCSDEMMDS CRNDCFSSIE  1200
ELSPTADAGK SDAVSSNREV QFPPSVTDDP GGTSQADGFD RLKASGGHST SSSEGETKSA  1260
DAPVDPRETG LDVHPPPACT MSQGMVGSTM ARNRGMESMD AGWAGVPGNM NMGWGGSPQG  1320
FPNMGWGSGM VPPWGNPSYN LGGYNGSLPW DSPRRYNGER FAGPRDWGFQ GGDSGFGRGR  1380
PMWSRQSHGG GGGGYSRPPH KGQRVCKFYE SGHCKKGASC DYLHP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0C3H family protein