PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027077503.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 271aa MW: 30909.5 Da PI: 8.7765

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027077503.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++ +++G g W+ ++ + g++R++k+c++rw++yl XP_027077503.1 9 KGAWTEEEDILLRKCMEKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYL 56 79********************************************97 PP
2	Myb_DNA-binding	44.3	4.1e-14	62	107	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + +E +ll+++ k+lG++ W++Ia +++ gRt++++k++w+++l XP_027077503.1 62 RGDFASDEVDLLIRLQKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 107 6778889*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MRNTDGLRKG AWTEEEDILL RKCMEKYGEG KWHQVPVRAG LNRCRKSCRL RWLNYLRPDI 60 KRGDFASDEV DLLIRLQKLL GNRWSLIAGR LPGRTANDVK NYWNTHLIKK KMAFRRQPDE 120 KGQAGNTNYT TKPRASNIVK PRPWTFSKNA SGLRGKATTT TTATSTEIPT IRTTTNAQGL 180 KDSPPTIEKD DDNNMQWWDN LFLDEEGGEG TPLGYDASGE GNVTSLWFEE LSQMVFKEGD 240 VWTQENQNGS GYSSTDAGLW DFQISDHQTM Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	5e-67	MYB family protein