PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077204.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 570aa    MW: 64839.3 Da    PI: 7.2669
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.12.5e-1121965661374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++lL++cA+ +s+ d++ a++lL+++++++sp+gd ++Rla+yf+ AL+ar++++++++y a++++ ++    +++l+a++++  +sP+ k+s+
  XP_027077204.1 196 MRSLLTQCAQSISDFDNRTANQLLNQIRQHSSPHGDGNERLAHYFADALEARVSGMGTTMYTAFSTRVSA----ADTLKAYQAYILASPFRKMSN 286
                     5799*********************************************************999999986....99******************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +++ + Il+ + +++++HiiDf+i +G++Wp+++qaL++Rp+gpp+l iTg++ p++g   +e++eetg+rLa+++++++vpfe+++ +a+++e+
  XP_027077204.1 287 ILTGKSILKLTTEASQIHIIDFGILYGFHWPCFIQALSKRPGGPPKLSITGIDLPQPGlrPAERVEETGRRLAHYCKKFNVPFEYHA-IARKWET 380
                     ***************************************************************************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++leeL++++ E+++  + ++l +++de+  ++s+rd+vL+l+k+++P+++v+   +  +n++ F++rf eal+++s+lfd+++++lpr++++r 
  XP_027077204.1 381 ISLEELKIDRSETVIATCLYRLRNVPDETSVTSSARDTVLHLIKKINPDLFVHGILNGTYNAPFFVTRFREALHHFSSLFDMFDKTLPRQDQDRL 475
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+e+lgr+  nv+aceg++r+er et+++W++r e+aGF+++pl+++++k++++ ++  + + + v+e+ +++++gWk+r ++++S W+
  XP_027077204.1 476 VFEKEVLGRQSINVIACEGTARIERPETYKQWQARNERAGFRQIPLNKDIVKEVRAKVKLQYHKDFLVDEDGKWILQGWKGRVIYALSYWK 566
                     **************************************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    
MAGFECDFPS ITSSGPLNLS NYHVDALPGE HDGDSSLPGD TFGAVLQYLN QMLMGEDLEQ  60
RPCMYQELSA LQAAEKSFYD ALTGVEIIKV ADEKEKERDN FTNGSARKRN HYRQDDEHVE  120
AGRATKQFAS YAEEPTEIFD EVLLSSSSNA GSWDLSYCDA KPGRWNNQQI GLTQEPKRGR  180
PRASEKKLTI REVVDMRSLL TQCAQSISDF DNRTANQLLN QIRQHSSPHG DGNERLAHYF  240
ADALEARVSG MGTTMYTAFS TRVSAADTLK AYQAYILASP FRKMSNILTG KSILKLTTEA  300
SQIHIIDFGI LYGFHWPCFI QALSKRPGGP PKLSITGIDL PQPGLRPAER VEETGRRLAH  360
YCKKFNVPFE YHAIARKWET ISLEELKIDR SETVIATCLY RLRNVPDETS VTSSARDTVL  420
HLIKKINPDL FVHGILNGTY NAPFFVTRFR EALHHFSSLF DMFDKTLPRQ DQDRLVFEKE  480
VLGRQSINVI ACEGTARIER PETYKQWQAR NERAGFRQIP LNKDIVKEVR AKVKLQYHKD  540
FLVDEDGKWI LQGWKGRVIY ALSYWKPAHE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.11e-173GRAS family protein