PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077196.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 664aa    MW: 74815.8 Da    PI: 6.117
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.13.1e-1032926612373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       lLl+cA+ v ++d + a+  L+ ++++a ++gdp qRla  f++AL+arla++++ely+++++++ s    +eel+a++++  + P+ +++  
  XP_027077196.1 292 SALLLNCAHSVVADDRRTANDQLKLIKQHACSTGDPQQRLAILFANALEARLAGNGPELYATVKSKRRS---AAEELKAFRVYL-CAPFRQIASC 382
                     579*********************************************************999999998...899999999865.89******** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN++Il+a+++++++Hi+Df+i++G+QWp+L+q+L++R++gpp+lRiTg++ p++g   +e++eetg+rLak++e+++vpf ++++  k++e++
  XP_027077196.1 383 FANKMILKAASRAKTLHIVDFGIGYGFQWPSLIQQLSNRDGGPPKLRITGIEYPKPGfrPAERIEETGRRLAKYCERFNVPFVYQAIPIKNWEKI 477
                     ********************************************************9************************************** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +leeL++ ++E+++Vn++l+ +++ld+ v+ + +rd+vL+l+++++P ++v      ++ ++ Fl+r  eal ++sa+fd l+ +lp+++++r k
  XP_027077196.1 478 RLEELKLTRDEVIVVNCQLRFKNMLDQVVDGDCPRDAVLRLIREINPAIFVSDVLSGQLCAPFFLTRCREALFFFSAVFDFLHHNLPPDDKQRLK 572
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      E+e++g e++n +aceg+er+er et+++W+ r ++aGFk +pl+++  k+ ++ +++ + + +  +ee g++++gWk++ ++++S+W
  XP_027077196.1 573 FEQEFMGTEVMNTIACEGSERVERAETYKQWQIRYKRAGFKMLPLNQDLKKELRSKVKEGYHKDFLFDEEGGWILQGWKGKIITACSCW 661
                     ***********************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    
MLKYINQMLM EDFSEEQPNI SPDPLALKAA EKSLYHVLGK SYPPSPHEPV AALDQIAESS  60
QESTDSCSQH HTDGCDTDTS TIDSRPILDP VESSGKGHQP WDKYFKSSFQ TSSLDSVHSL  120
SSSSNSGDGL VGFLTNENMI SSSVSDSDTI LQFKKGLEEG NKFLPAGKLM NIDLDKYTLP  180
SKLENAGLVT TGKKDEEYLR TGMRGRKHQH QDDGDAHLGR KYKQSAVSME EVELSEAFDR  240
ILLFGDSRGQ DLCCNVDVEQ PTQLSEALDH ESDVSKSTEE RLGTDNEALD LSALLLNCAH  300
SVVADDRRTA NDQLKLIKQH ACSTGDPQQR LAILFANALE ARLAGNGPEL YATVKSKRRS  360
AAEELKAFRV YLCAPFRQIA SCFANKMILK AASRAKTLHI VDFGIGYGFQ WPSLIQQLSN  420
RDGGPPKLRI TGIEYPKPGF RPAERIEETG RRLAKYCERF NVPFVYQAIP IKNWEKIRLE  480
ELKLTRDEVI VVNCQLRFKN MLDQVVDGDC PRDAVLRLIR EINPAIFVSD VLSGQLCAPF  540
FLTRCREALF FFSAVFDFLH HNLPPDDKQR LKFEQEFMGT EVMNTIACEG SERVERAETY  600
KQWQIRYKRA GFKMLPLNQD LKKELRSKVK EGYHKDFLFD EEGGWILQGW KGKIITACSC  660
WVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein