PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077168.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 739aa    MW: 83632.1 Da    PI: 5.3054
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.21.6e-1073677362373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +  L++cA++v+s+d++ a++ L+ l+++as++gdp qRla+ f++AL+arla++++ l +al++++ +   +seel+al++f+ + P+ ++  +
  XP_027077168.1 367 IAMLISCAQFVASDDHSTANEQLKLLRQHASSSGDPHQRLAFIFVNALEARLAGNGHDLHAALTSKPIA---TSEELKALRVFF-CAPFRQIYAF 457
                     678**********************************************************99999998...899*******98.78******** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN++Ilea+++++++Hi+Df+i+ G+QWp+L+q L+++++gpp+lRiTg++ p++g   + ++e+tg+rLak++++++vpfe+++++++++e++
  XP_027077168.1 458 FANKMILEAASNATTLHIVDFGITFGFQWPNLIQRLSNKDGGPPKLRITGINFPQPGlrPAAKIEQTGHRLAKYCKRFNVPFEYQAIATRNWEKI 552
                     **********************************************************9***************************9999***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++eeL++k++E+laV +++  +++lde v  e +rd++L+l+++++P+++v     a+++++ Fl rf eal ++s++fd l+++lpr++ +r+k
  XP_027077168.1 553 TIEELKLKRNEVLAVAFQFDSKNILDELVGNECPRDAILSLIRTMNPDILVTEVLSAQLSGPFFLSRFREALFFFSTIFDVLDNNLPRKDGQRMK 647
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      E+e+lg ei n+vaceg +r+er+et+++W++r ++aGF+++pl+++ +k+ ++ +++ + + ++ +e+  +l++gWk++ + ++S W
  XP_027077168.1 648 FEQEFLGTEIFNIVACEGLARVERCETYKQWQARYKRAGFRQLPLNQDLMKELRSKVKEGYHKDFMFDEDGCWLLQGWKGKVICACSPW 736
                     ***********************************************************99888************************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    
MDHQFPDVNG SGIDEGNVFS RLKQSNFNFQ FQESLDPVNG FGFDGDTVYA SLRSEDPSTY  60
SLFYNMSSEF DFLDEYEFYP VLKYINQMLM EENVDEQPSM SHDPLAIQAA EKSFYEILGE  120
NYSPSPLETS VAALERNAQT PEGFSESSTK DSRNSSRSSI SAAPSPVLDP NEWPAKQHCP  180
LGNSLESSFQ TNSIESPPQL KNLTICGDGQ VGSLTDKNLV SSFYSDSRTM LQFKKGLEEG  240
NKFLPTGNQL VIDLDKYTFP SEMKNAELVP KGNKDKEEKL NNGLRGRKHQ YLDDSDSYIR  300
RSNKQSALYE EDVELSETIE RALLYGDVKP SHGFSETLHN DQLLHRSHVG KSQTERQVTD  360
GGPFDLIAML ISCAQFVASD DHSTANEQLK LLRQHASSSG DPHQRLAFIF VNALEARLAG  420
NGHDLHAALT SKPIATSEEL KALRVFFCAP FRQIYAFFAN KMILEAASNA TTLHIVDFGI  480
TFGFQWPNLI QRLSNKDGGP PKLRITGINF PQPGLRPAAK IEQTGHRLAK YCKRFNVPFE  540
YQAIATRNWE KITIEELKLK RNEVLAVAFQ FDSKNILDEL VGNECPRDAI LSLIRTMNPD  600
ILVTEVLSAQ LSGPFFLSRF REALFFFSTI FDVLDNNLPR KDGQRMKFEQ EFLGTEIFNI  660
VACEGLARVE RCETYKQWQA RYKRAGFRQL PLNQDLMKEL RSKVKEGYHK DFMFDEDGCW  720
LLQGWKGKVI CACSPWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein