PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027077168.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 739aa MW: 83632.1 Da PI: 5.3054 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 351.2 | 1.6e-107 | 367 | 736 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + L++cA++v+s+d++ a++ L+ l+++as++gdp qRla+ f++AL+arla++++ l +al++++ + +seel+al++f+ + P+ ++ + XP_027077168.1 367 IAMLISCAQFVASDDHSTANEQLKLLRQHASSSGDPHQRLAFIFVNALEARLAGNGHDLHAALTSKPIA---TSEELKALRVFF-CAPFRQIYAF 457 678**********************************************************99999998...899*******98.78******** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN++Ilea+++++++Hi+Df+i+ G+QWp+L+q L+++++gpp+lRiTg++ p++g + ++e+tg+rLak++++++vpfe+++++++++e++ XP_027077168.1 458 FANKMILEAASNATTLHIVDFGITFGFQWPNLIQRLSNKDGGPPKLRITGINFPQPGlrPAAKIEQTGHRLAKYCKRFNVPFEYQAIATRNWEKI 552 **********************************************************9***************************9999***** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++eeL++k++E+laV +++ +++lde v e +rd++L+l+++++P+++v a+++++ Fl rf eal ++s++fd l+++lpr++ +r+k XP_027077168.1 553 TIEELKLKRNEVLAVAFQFDSKNILDELVGNECPRDAILSLIRTMNPDILVTEVLSAQLSGPFFLSRFREALFFFSTIFDVLDNNLPRKDGQRMK 647 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 E+e+lg ei n+vaceg +r+er+et+++W++r ++aGF+++pl+++ +k+ ++ +++ + + ++ +e+ +l++gWk++ + ++S W XP_027077168.1 648 FEQEFLGTEIFNIVACEGLARVERCETYKQWQARYKRAGFRQLPLNQDLMKELRSKVKEGYHKDFMFDEDGCWLLQGWKGKVICACSPW 736 ***********************************************************99888************************* PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 739 aa Download sequence |
MDHQFPDVNG SGIDEGNVFS RLKQSNFNFQ FQESLDPVNG FGFDGDTVYA SLRSEDPSTY 60 SLFYNMSSEF DFLDEYEFYP VLKYINQMLM EENVDEQPSM SHDPLAIQAA EKSFYEILGE 120 NYSPSPLETS VAALERNAQT PEGFSESSTK DSRNSSRSSI SAAPSPVLDP NEWPAKQHCP 180 LGNSLESSFQ TNSIESPPQL KNLTICGDGQ VGSLTDKNLV SSFYSDSRTM LQFKKGLEEG 240 NKFLPTGNQL VIDLDKYTFP SEMKNAELVP KGNKDKEEKL NNGLRGRKHQ YLDDSDSYIR 300 RSNKQSALYE EDVELSETIE RALLYGDVKP SHGFSETLHN DQLLHRSHVG KSQTERQVTD 360 GGPFDLIAML ISCAQFVASD DHSTANEQLK LLRQHASSSG DPHQRLAFIF VNALEARLAG 420 NGHDLHAALT SKPIATSEEL KALRVFFCAP FRQIYAFFAN KMILEAASNA TTLHIVDFGI 480 TFGFQWPNLI QRLSNKDGGP PKLRITGINF PQPGLRPAAK IEQTGHRLAK YCKRFNVPFE 540 YQAIATRNWE KITIEELKLK RNEVLAVAFQ FDSKNILDEL VGNECPRDAI LSLIRTMNPD 600 ILVTEVLSAQ LSGPFFLSRF REALFFFSTI FDVLDNNLPR KDGQRMKFEQ EFLGTEIFNI 660 VACEGLARVE RCETYKQWQA RYKRAGFRQL PLNQDLMKEL RSKVKEGYHK DFMFDEDGCW 720 LLQGWKGKVI CACSPWVPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | GRAS family protein |