PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027077019.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 221aa MW: 25538.4 Da PI: 10.6099

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027077019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	119	142	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H r H XP_027077019.1 119 YICSVCGRKCKTHLDLKKHFRQlH 142 89*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
LSDPNSYGKW ANIRACAAEA AAESEIDMVR TKEGIYTAKP KKVVVLWDLD NKPPRGPPYQ 60 AAMALKKVAQ HFGNLVDISA YANRHAFIHL PQWVVEERRE RRRMDILERK GVSTPSEPYI 120 CSVCGRKCKT HLDLKKHFRQ LHERERQKKL NRMRSLKGKK RQRFKERFID GNEKYNEAAR 180 TLTSPKVGYG LASELRRAGV FVKTVEDKPQ ENFTNIPKPH S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-104	C2H2 family protein