PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027076887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 488aa MW: 55130.8 Da PI: 4.6013 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 242.4 | 1.9e-74 | 113 | 472 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 ++lLl Aea+++g+ + a+ + rl+++ s + +pm Rla yft++L + + a + e++ ++++++++a+++ +e+sP++kf XP_027076887.1 113 TDLLLMGAEAIEAGNVRFASLVALRLKDILSDQEngdNPMDRLALYFTQGLLDKSLA-------APELPEDPVSQQTNAITAFQMVQELSPYVKF 200 689999*********************99555442257************9887766.......2333344444677899*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +h+taNqaIlea+eg +++H+iDfd+++G+QWp+L+ La+R++ slRiT+++ ++ s+ ++++tg rL++fA++++++f+f+ +++++ ed XP_027076887.1 201 AHFTANQAILEAAEGLQEIHVIDFDVMEGIQWPSLMVDLAAREDA--SLRITAIVG-DKRSSCNIQQTGFRLQDFANSINLSFSFDQVLVTKEED 292 ******************************************765..9******99.66799*************************86665555 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl.eaklpre 278 + ee+ k g +l+ n++++ +++ ++ sl + ++ + +++lsPk++v+v++e ++ s+sF+e f+eal++y+al dsl + + XP_027076887.1 293 F--EEI--KVGHTLIANCMINQLHMPCRESSLVK---TFFNGLRKLSPKILVLVQEElfsfSKAPSTSFAEFFCEALDHYTALSDSLrSGFCGGY 380 5..777..5699*********9999988888888...********************7664455777********************55555666 PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + + + +Ere+l+++i + v + ++ +e + + ++ GF+p+p+s+ +++qak+l++ ++ gy v++e+ l+l+Wk+rpL+++S W XP_027076887.1 381 KLALKIIEREFLRKRILDSVKHFPCG-IMGNE-SNMLPDYPSMNGFRPIPMSSCNVTQAKHLISLFN-GGYWVQNEHCKLTLCWKSRPLTTASIW 472 689999**************998887.44444.45556777899***********************.89************************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence |
MEFEKMYFDV EPSYIIDHHC CSLETALPFQ NNHLSFQDYV SNDIVSTENF LEMETDIKDF 60 DSIAKNCALD HENVVHKRLL PCQEIQETMD ILAAEQSHLK DIQDELMEES SLTDLLLMGA 120 EAIEAGNVRF ASLVALRLKD ILSDQENGDN PMDRLALYFT QGLLDKSLAA PELPEDPVSQ 180 QTNAITAFQM VQELSPYVKF AHFTANQAIL EAAEGLQEIH VIDFDVMEGI QWPSLMVDLA 240 AREDASLRIT AIVGDKRSSC NIQQTGFRLQ DFANSINLSF SFDQVLVTKE EDFEEIKVGH 300 TLIANCMINQ LHMPCRESSL VKTFFNGLRK LSPKILVLVQ EELFSFSKAP STSFAEFFCE 360 ALDHYTALSD SLRSGFCGGY KLALKIIERE FLRKRILDSV KHFPCGIMGN ESNMLPDYPS 420 MNGFRPIPMS SCNVTQAKHL ISLFNGGYWV QNEHCKLTLC WKSRPLTTAS IWVPTASSKT 480 SLARSTYF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-54 | GRAS family protein |