PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027076887.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 488aa    MW: 55130.8 Da    PI: 4.6013
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027076887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS242.41.9e-741134722373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     ++lLl  Aea+++g+ + a+ +  rl+++ s +    +pm Rla yft++L  + +        a +  e++ ++++++++a+++ +e+sP++kf
  XP_027076887.1 113 TDLLLMGAEAIEAGNVRFASLVALRLKDILSDQEngdNPMDRLALYFTQGLLDKSLA-------APELPEDPVSQQTNAITAFQMVQELSPYVKF 200
                     689999*********************99555442257************9887766.......2333344444677899*************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea+eg +++H+iDfd+++G+QWp+L+  La+R++   slRiT+++  ++ s+ ++++tg rL++fA++++++f+f+ +++++ ed
  XP_027076887.1 201 AHFTANQAILEAAEGLQEIHVIDFDVMEGIQWPSLMVDLAAREDA--SLRITAIVG-DKRSSCNIQQTGFRLQDFANSINLSFSFDQVLVTKEED 292
                     ******************************************765..9******99.66799*************************86665555 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl.eaklpre 278
                     +  ee+  k g +l+ n++++  +++ ++ sl +   ++ + +++lsPk++v+v++e    ++  s+sF+e f+eal++y+al dsl +   +  
  XP_027076887.1 293 F--EEI--KVGHTLIANCMINQLHMPCRESSLVK---TFFNGLRKLSPKILVLVQEElfsfSKAPSTSFAEFFCEALDHYTALSDSLrSGFCGGY 380
                     5..777..5699*********9999988888888...********************7664455777********************55555666 PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + + + +Ere+l+++i + v +     ++ +e  +   +  ++ GF+p+p+s+ +++qak+l++ ++  gy v++e+  l+l+Wk+rpL+++S W
  XP_027076887.1 381 KLALKIIEREFLRKRILDSVKHFPCG-IMGNE-SNMLPDYPSMNGFRPIPMSSCNVTQAKHLISLFN-GGYWVQNEHCKLTLCWKSRPLTTASIW 472
                     689999**************998887.44444.45556777899***********************.89************************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    
MEFEKMYFDV EPSYIIDHHC CSLETALPFQ NNHLSFQDYV SNDIVSTENF LEMETDIKDF  60
DSIAKNCALD HENVVHKRLL PCQEIQETMD ILAAEQSHLK DIQDELMEES SLTDLLLMGA  120
EAIEAGNVRF ASLVALRLKD ILSDQENGDN PMDRLALYFT QGLLDKSLAA PELPEDPVSQ  180
QTNAITAFQM VQELSPYVKF AHFTANQAIL EAAEGLQEIH VIDFDVMEGI QWPSLMVDLA  240
AREDASLRIT AIVGDKRSSC NIQQTGFRLQ DFANSINLSF SFDQVLVTKE EDFEEIKVGH  300
TLIANCMINQ LHMPCRESSL VKTFFNGLRK LSPKILVLVQ EELFSFSKAP STSFAEFFCE  360
ALDHYTALSD SLRSGFCGGY KLALKIIERE FLRKRILDSV KHFPCGIMGN ESNMLPDYPS  420
MNGFRPIPMS SCNVTQAKHL ISLFNGGYWV QNEHCKLTLC WKSRPLTTAS IWVPTASSKT  480
SLARSTYF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-54GRAS family protein