PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076671.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WOX

Protein Properties

Length: 271aa MW: 30255.8 Da PI: 5.6409

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.4e-21	95	155	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n ps+++++e++++l +++e++V++WFqNrRa+ k+ XP_027076671.1 95 RQRWTPTPVQLQILERIFDQgNGAPSKQKIKEITNELlqhgQISETNVYNWFQNRRARSKR 155 89***************99************************************97 PP
2	Wus_type_Homeobox	97.3	1.3e-31	95	157	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G P+k++i++it+eL ++G+i+++NV++WFQNr+aR+++kq XP_027076671.1 95 RQRWTPTPVQLQILERIFDQGNGAPSKQKIKEITNELLQHGQISETNVYNWFQNRRARSKRKQ 157 89***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MEWDKQPPQQ PQATTAAAAA AAAEELNNGG MFVKVMTDEQ MEVLRKQIAV YATICEQLVD 60 LHKSLTSHHD LAGARLGNLY CDPLVTSAGH KITGRQRWTP TPVQLQILER IFDQGNGAPS 120 KQKIKEITNE LLQHGQISET NVYNWFQNRR ARSKRKQQAA ASNNIESEVE TEVESPNDKK 180 TKPEDLQSPH IPTSRNEELC FQNTDVSSGM LSIDPRSSKP EPMFPSDGSS KSAGSFGQMS 240 FYGRMDQLLG KMEVPESYNP YLHAEDYNMT G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	157	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-76	WOX family protein