PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076653.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 392aa MW: 43571.4 Da PI: 6.4194

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.8e-06	17	57	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r+C+++ + + +C+ ++ +lC C +H H+ XP_027076653.1 17 RVCDTCRSAACTVYCRADSAYLCTGCDARIHAAnkvasrHE 57 79****99*******************6556666676 PP
2	zf-B_box	29.9	1.2e-09	59	104	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC+ C + +H+ H +vp+ XP_027076653.1 59 VWVCEACERAPAAFLCKADAASLCAACDSDIHSAnplarrHHRVPI 104 689*****************************66899999877775 PP
3	CCT	71	2.9e-24	323	366	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_027076653.1 323 REAKVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 366 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MLKQEDTNGG GANTWARVCD TCRSAACTVY CRADSAYLCT GCDARIHAAN KVASRHERVW 60 VCEACERAPA AFLCKADAAS LCAACDSDIH SANPLARRHH RVPILPIPGT LYGPPATDPR 120 GSMIGQDTED ADDGFLTQDV DETIDENDED EAASWLLLNP VKNNSHHHHH HQNNSNNNML 180 FGGEVVDEYL DLVEYSSCQE NQYTSHHQYS NQQQHYAVPQ KSYGGDSVVP VRSGGAKDQL 240 QLQHQHHQSF QLGLEYEASN TGYAYPVSSM SHSVSISSMD CGVVPESTMS DVSISHHRPP 300 KGTIDLFASP PIQMPQQLTP MDREAKVLRY REKKKTRKFE KTIRYASRKA YAETRPRIKG 360 RFAKRTDVEV EVDQMLSTAL MVESGYGIVP SF

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MLKQEDTNGG GANTWARVCD TCRSAACTVY CRADSAYLCT GCDARIHAAN KVASRHERVW  60
VCEACERAPA AFLCKADAAS LCAACDSDIH SANPLARRHH RVPILPIPGT LYGPPATDPR  120
GSMIGQDTED ADDGFLTQDV DETIDENDED EAASWLLLNP VKNNSHHHHH HQNNSNNNML  180
FGGEVVDEYL DLVEYSSCQE NQYTSHHQYS NQQQHYAVPQ KSYGGDSVVP VRSGGAKDQL  240
QLQHQHHQSF QLGLEYEASN TGYAYPVSSM SHSVSISSMD CGVVPESTMS DVSISHHRPP  300
KGTIDLFASP PIQMPQQLTP MDREAKVLRY REKKKTRKFE KTIRYASRKA YAETRPRIKG  360
RFAKRTDVEV EVDQMLSTAL MVESGYGIVP SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-99	CO-like family protein