PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076621.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 400aa MW: 44928.6 Da PI: 6.6869

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.6	1.6e-29	262	317	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+++LH++Fv+a+ +LGG++ AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ XP_027076621.1 262 KQRRCWSHDLHQNFVKALFELGGAQAATPKHIREIMQVDGLTNDEVKSHLQKYRLH 317 79****************************************************97 PP
2	Myb_DNA-binding	35.1	3e-11	264	315	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ ++++ +v+a +lGg t+k I + m+ g+t ++ks++qky+ XP_027076621.1 264 RRCWSHDLHQNFVKALFELGGAqaaTPKHIREIMQvDGLTNDEVKSHLQKYR 315 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MKFDSKEFRL LDLNSSGFVP KSISDLLAEV SMIPDIPLKL SKLNDYVCVL EQEMKKIDGF 60 RRELPLCMLL LNDAIWKLKE EVVKLKKREV ETVVMEEFMP LKGNSDREDE RPKRKSADWT 120 DKKTWMSSAQ LWTTPIQYEN GFDTVIIQDT LFLHQARHQE RSDGAARWSL SDQARSFNKK 180 LGGAFLPFKK PGGAVVTKTE EEEEEEEDYP LNGLSLSMPA LAEVGSDDLT NSKGKHVGVA 240 SDDGTGVLSE GGSSSQTTQG KKQRRCWSHD LHQNFVKALF ELGGAQAATP KHIREIMQVD 300 GLTNDEVKSH LQKYRLHIRK LMPSSSTSAS PNYEWLRRGE RSYLRKPSAK QSASPEGPLH 360 LAGGGSAKGA SVTGGDSMEE EEDRRSESCS WKDRHQKPTD

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MKFDSKEFRL LDLNSSGFVP KSISDLLAEV SMIPDIPLKL SKLNDYVCVL EQEMKKIDGF  60
RRELPLCMLL LNDAIWKLKE EVVKLKKREV ETVVMEEFMP LKGNSDREDE RPKRKSADWT  120
DKKTWMSSAQ LWTTPIQYEN GFDTVIIQDT LFLHQARHQE RSDGAARWSL SDQARSFNKK  180
LGGAFLPFKK PGGAVVTKTE EEEEEEEDYP LNGLSLSMPA LAEVGSDDLT NSKGKHVGVA  240
SDDGTGVLSE GGSSSQTTQG KKQRRCWSHD LHQNFVKALF ELGGAQAATP KHIREIMQVD  300
GLTNDEVKSH LQKYRLHIRK LMPSSSTSAS PNYEWLRRGE RSYLRKPSAK QSASPEGPLH  360
LAGGGSAKGA SVTGGDSMEE EEDRRSESCS WKDRHQKPTD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	3e-45	G2-like family protein