PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076604.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 576aa MW: 62078.3 Da PI: 9.638

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.1	8.5e-25	215	259	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_027076604.1 215 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 259 79****************************************985 PP
2	QLQ	62.4	1.2e-21	145	181	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+PvP++Ll +++k XP_027076604.1 145 GPFTPSQWMELEHQALIYKYIIANVPVPSHLLIPLRK 181 59*******************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MDFGMITTEG VGGDASCNGA GSEPFGISLE KRGGSGVLKT ERSGSIQESL RVSKSARAGE 60 FCIFSQGQIP ALLRSGSGLP GNNGQTMISF SSQSQIPYFS DEDASKTSAF PFFIAPPDPL 120 CPRTSGYATE KSTEGMRGPF AKFRGPFTPS QWMELEHQAL IYKYIIANVP VPSHLLIPLR 180 KSFNPCAFSS LSSGSYGSSS LGWGSFHLGF AGSTDPEPGR CRRTDGKKWR CSRDAVPDQK 240 YCERHINRGR HRSRKPVEGQ NGHAVSGSTA SKVAPIASSS SASVMSSSSA SNSLGAVQHS 300 FKNLHTRADN ASTEHLVSRM QDLHGLSAAG DSINLKSKDS PFSIQKQHAI FRGSSQTEFG 360 VVSPDSLLNP SQRCSRMSSK TSDSLLGFND HETQNQHLLR HFIDKCPKDQ SHRASISWPE 420 ELKSDWTQLS MSIPMSTSDF SSSSRSPRQD KPTLSPLRLA REIDPIQMGL SVTKDVVGQN 480 QKQANWLPAS WGNSILGGPL GEVLNSTSSN VGAFKSSSTL NLMTDVWDNS LQMGCSPTGV 540 LQKSTFVSLS NSSSGSSPRT DNKKAPEGYK VRIIKN

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MDFGMITTEG VGGDASCNGA GSEPFGISLE KRGGSGVLKT ERSGSIQESL RVSKSARAGE  60
FCIFSQGQIP ALLRSGSGLP GNNGQTMISF SSQSQIPYFS DEDASKTSAF PFFIAPPDPL  120
CPRTSGYATE KSTEGMRGPF AKFRGPFTPS QWMELEHQAL IYKYIIANVP VPSHLLIPLR  180
KSFNPCAFSS LSSGSYGSSS LGWGSFHLGF AGSTDPEPGR CRRTDGKKWR CSRDAVPDQK  240
YCERHINRGR HRSRKPVEGQ NGHAVSGSTA SKVAPIASSS SASVMSSSSA SNSLGAVQHS  300
FKNLHTRADN ASTEHLVSRM QDLHGLSAAG DSINLKSKDS PFSIQKQHAI FRGSSQTEFG  360
VVSPDSLLNP SQRCSRMSSK TSDSLLGFND HETQNQHLLR HFIDKCPKDQ SHRASISWPE  420
ELKSDWTQLS MSIPMSTSDF SSSSRSPRQD KPTLSPLRLA REIDPIQMGL SVTKDVVGQN  480
QKQANWLPAS WGNSILGGPL GEVLNSTSSN VGAFKSSSTL NLMTDVWDNS LQMGCSPTGV  540
LQKSTFVSLS NSSSGSSPRT DNKKAPEGYK VRIIKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	3e-85	GRF family protein