PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027076550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 175aa MW: 20365.4 Da PI: 8.5115 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.5e-18 | 83 | 135 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LA+ l+L+ rqV +WFqNrRa++k XP_027076550.1 83 KKRLNLEQVKVLEKSFELGSKLEPERKMQLARALELQPRQVAIWFQNRRARWK 135 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.5 | 1.8e-38 | 81 | 168 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekk+rl+ eqvk+LE+sFe +kLeperK++lar+L+lqprqva+WFqnrRAR+ktkq+Ekdye+Lkr+++ lk++ne L+ v+e+ XP_027076550.1 81 EKKKRLNLEQVKVLEKSFELGSKLEPERKMQLARALELQPRQVAIWFQNRRARWKTKQMEKDYEVLKRQVEILKADNELLRMMVSEIL 168 69******************************************************************************99887765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence |
MIHGNMETFF PVNSMFQNHQ DHDRLPSSNN PSAPCAAHRD FPAISSALMR RSMLFSGVDM 60 SEEALRLEDD MSDDGAAPLG EKKKRLNLEQ VKVLEKSFEL GSKLEPERKM QLARALELQP 120 RQVAIWFQNR RARWKTKQME KDYEVLKRQV EILKADNELL RMMVSEILKV SELRH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-53 | HD-ZIP family protein |