PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027076482.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 413aa    MW: 44601.6 Da    PI: 7.2425
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027076482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.7e-19334368135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  XP_027076482.1 334 CSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRL 368
                     *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    
MLYRTHHHPF LFPLNPSFTS SSLSSSASSS PHPFPLPLPP TAAPPLSSSP TSSPQVVVAQ  60
EEGMEGALKS SFRPDVAPLK TNPHPHHLHQ HQHQQPAFSD DMLAVNNNGQ NMESDFFVDD  120
LLDFSNAPAE DPEEHKPHEK LDENESATTS IITKSNVTLS PKDDFGSLPD SALDVPADDL  180
ESLEWLSHFV EDSFSEYSLT CPVSKFPPAP AKARSEPEAP VEAKPSFTTP VQTKARTKRA  240
RTGGRVWSLV GSPSLTESSS SSTSSSSTTT SSSSPQPCNP WLAYSSPSQC QTQQTAESLV  300
GKLPVKKQKK KPMALDSAGG GGGYSGGGQQ PRRCSHCGVQ KTPQWRAGPL GAKTLCNACG  360
VRYKSGRLLP EYRPACSPTF SSELHSNNHR KVLEMRRKKE VETGLTPPPV QSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305312VKKQKKKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-43GATA family protein