PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027076363.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 313aa    MW: 34946.4 Da    PI: 4.8188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027076363.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.83.4e-174695255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR++iN++f+ Lr+++P++    ++K +Ka+ L ++++YI+ Lq
  XP_027076363.1 46 RSKHSETEQRRRSKINERFQILRDIIPEN----DQKRDKASFLLEVIQYIQFLQ 95
                    899*************************9....9*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MVRTSKSRQE DDDFDDEEFA SSTPENSSQK VKVEGKGNDQ KVNALRSKHS ETEQRRRSKI  60
NERFQILRDI IPENDQKRDK ASFLLEVIQY IQFLQERIQM YEETYQGWNQ EPSKLIPWRS  120
NSGLIENFVD QPLLMRNGSG HEDNIIVSPT LLSNAQTAMD SELNGAPLCT PTDHPQQSGN  180
EENSSNLLVQ PNLFHVVSTQ PPQGSFPDPE HLATHSPSEY WQGKLTASEC AVPSYKTSQR  240
EQLHPDSGEA SISNVYSQGL LNTLKHALQS SGVDLSQVNI SVQLDVGKRT NEGTASTVIR  300
EGGCTSCRGS VDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-58bHLH family protein