PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076102.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 398aa MW: 43827.8 Da PI: 5.9504

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076102.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.7	2.6e-07	157	178	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_027076102.1 157 FCEICGKGFKRDANLRMHMRAH 178 6*******************99 PP
2	zf-C2H2	11.7	0.0008	280	296	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ XP_027076102.1 280 SCGTSFSRKDKLFGHMA 296 5**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MSFLGNLPSS AKPPGGAAPY PGGADPSVAL LNLSTVQARM DNLQKFLSDS VNSKTLIGQD 60 HMDMVSTEIT SAIRQIIVNG AALLACTQST QATSLPQASD VEEKKVEKKM RFDTAKDTVV 120 GNQLVDPKIE VAEDEESDDY EILELDAVEL LAEHIHFCEI CGKGFKRDAN LRMHMRAHGN 180 QFKTVEALAK PARCGESGGG AEKDMIRKTR FSCPYVGCNR NKQHKKFRPL KSAICVKNHF 240 KRSHCPKMYS CNRCNKKSFS VVADLKSHLK HCGETKWKCS CGTSFSRKDK LFGHMALFEG 300 HMPAVVEEEE AVDKGKRVVV MVEDEEEEES SPGTKEMKMD MDMEMDMDGN GSPISDGFFD 360 GLTLDGFGSL ENYCFQDLLS PPVSAAANSS GMDSFFNF

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MSFLGNLPSS AKPPGGAAPY PGGADPSVAL LNLSTVQARM DNLQKFLSDS VNSKTLIGQD  60
HMDMVSTEIT SAIRQIIVNG AALLACTQST QATSLPQASD VEEKKVEKKM RFDTAKDTVV  120
GNQLVDPKIE VAEDEESDDY EILELDAVEL LAEHIHFCEI CGKGFKRDAN LRMHMRAHGN  180
QFKTVEALAK PARCGESGGG AEKDMIRKTR FSCPYVGCNR NKQHKKFRPL KSAICVKNHF  240
KRSHCPKMYS CNRCNKKSFS VVADLKSHLK HCGETKWKCS CGTSFSRKDK LFGHMALFEG  300
HMPAVVEEEE AVDKGKRVVV MVEDEEEEES SPGTKEMKMD MDMEMDMDGN GSPISDGFFD  360
GLTLDGFGSL ENYCFQDLLS PPVSAAANSS GMDSFFNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	7e-83	C2H2 family protein