PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076057.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 352aa MW: 41122.7 Da PI: 6.9923

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076057.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40	6.9e-13	35	114	12	98
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +g + +p f++++g++ ++ ++l+ ++g sW ++l ++ +++l kGWk+F++ ++e f+vF++ g+s+f v +f+ XP_027076057.1 35 DRG-IKIPTAFMRDYGES--LEQVVVLKVPTGASWPIEL--LQTEFGTWLDKGWKDFAEYYSIRECHFLVFEYCGDSQF--QVIIFD 114 334.89*******966..6679***********..999999**************************9999..888887 PP
2	B3	53.5	4.2e-17	256	351	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 f++ + ps+v+ s+ l ++ fa+++ +k+ ++ ++ l+ ++g + W v++ + + +++GW+eFv +n+L +gD++vF+l+++ + f + XP_027076057.1 256 FISFMQPSYVTYSCKLFFSPVFAKKY-LKECKHWDMELRVSEGtKIWPVTC--YIYTTKAKIKRGWEEFVLDNNLMVGDVCVFELMKDnRMF--N 345 788899******************.34456678888886666***..77777778**********************9964555..9 PP EEEE-S CS B3 94 vkvfrk 99 v+++r+ XP_027076057.1 346 VTIYRR 351 999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MATNQRGNNR SLDQALNHQA KKPPHFFKVV LSPMDRGIKI PTAFMRDYGE SLEQVVVLKV 60 PTGASWPIEL LQTEFGTWLD KGWKDFAEYY SIRECHFLVF EYCGDSQFQV IIFDPSASEI 120 EYRLEAPEDH GMHDHKNQPP MRRRRTMFQK SDEVESDDDS FEILGEVSAA ASCHTKQRRK 180 SAQIHEEQDS ESRKNENVEK LEVDVNPPQK MIKKESSEGV PSTRQSAIAK SETVIDKEKF 240 ISYQRAKTFT SENPFFISFM QPSYVTYSCK LFFSPVFAKK YLKECKHWDM ELRVSEGTKI 300 WPVTCYIYTT KAKIKRGWEE FVLDNNLMVG DVCVFELMKD NRMFNVTIYR RN

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MATNQRGNNR SLDQALNHQA KKPPHFFKVV LSPMDRGIKI PTAFMRDYGE SLEQVVVLKV  60
PTGASWPIEL LQTEFGTWLD KGWKDFAEYY SIRECHFLVF EYCGDSQFQV IIFDPSASEI  120
EYRLEAPEDH GMHDHKNQPP MRRRRTMFQK SDEVESDDDS FEILGEVSAA ASCHTKQRRK  180
SAQIHEEQDS ESRKNENVEK LEVDVNPPQK MIKKESSEGV PSTRQSAIAK SETVIDKEKF  240
ISYQRAKTFT SENPFFISFM QPSYVTYSCK LFFSPVFAKK YLKECKHWDM ELRVSEGTKI  300
WPVTCYIYTT KAKIKRGWEE FVLDNNLMVG DVCVFELMKD NRMFNVTIYR RN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-42	B3 family protein