PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075902.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 727aa MW: 84400.9 Da PI: 8.8134

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075902.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.5e-22	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+Y ++GFsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++l+leHnHel XP_027075902.1 26 KFYNKYDFKMGFSVRKDYLNKD-KDGMTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDLVLEHNHEL 113 6****************998.8888************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MDCSKLAENG TPELGMEFNS EEDAYKFYNK YDFKMGFSVR KDYLNKDKDG MTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMPSQRKVSV AQGFQAEISE DAGLSLKQNL ELMGTEAGGM GNVGYTRDDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY NFFGDVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKHPSTIL 300 TDQDHAMAAA LSIVMPETFH DLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFQEVE 360 QFNRVWEAMV KKHNLENNEW LSGLYKIRDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH 420 LKLDHDLVQF FRHFNQVVDE KRHNELIAEY EMRQKLPMVG LRQTPMLVHA SETYSPTVFV 480 AFQNEYGEST AMVILRQQDA AMFVEFAVMR YDGGPERTVV FNRNDLSVRC SCKKYENEGI 540 LCGHALKVFD TVGIKIIPPE YIKRRWTKRA RAGDCFDRRG QEVVADPKVM ISTRYRELAP 600 AMIKVATRAA MSEDTSKVAI TVISDLSKRV ELLLSESEEQ PLQNQKNLNM EERDKIEIVN 660 EMGEAVVARG IKKRDGGKKS KVMRSWVDKF DRVKRKSRLS RTTQTTVWIK FWYLGNIYAK 720 TKLLLYY

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MDCSKLAENG TPELGMEFNS EEDAYKFYNK YDFKMGFSVR KDYLNKDKDG MTTSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSV AQGFQAEISE DAGLSLKQNL ELMGTEAGGM GNVGYTRDDL KRYLRTRRER  180
SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY NFFGDVVTFD  240
TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKHPSTIL  300
TDQDHAMAAA LSIVMPETFH DLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFQEVE  360
QFNRVWEAMV KKHNLENNEW LSGLYKIRDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH  420
LKLDHDLVQF FRHFNQVVDE KRHNELIAEY EMRQKLPMVG LRQTPMLVHA SETYSPTVFV  480
AFQNEYGEST AMVILRQQDA AMFVEFAVMR YDGGPERTVV FNRNDLSVRC SCKKYENEGI  540
LCGHALKVFD TVGIKIIPPE YIKRRWTKRA RAGDCFDRRG QEVVADPKVM ISTRYRELAP  600
AMIKVATRAA MSEDTSKVAI TVISDLSKRV ELLLSESEEQ PLQNQKNLNM EERDKIEIVN  660
EMGEAVVARG IKKRDGGKKS KVMRSWVDKF DRVKRKSRLS RTTQTTVWIK FWYLGNIYAK  720
TKLLLYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1 family protein