PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075884.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family RAV
Protein Properties Length: 332aa    MW: 38069 Da    PI: 8.3981
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075884.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.2e-124289155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++kGV   k +grW A+I+       + r++lg+f ++ eAa a++ a+ kl g
  XP_027075884.1 42 PRFKGVVVQK-NGRWGAQIYA------HERIWLGTFKSEIEAAMAYDSAAIKLQG 89
                    689***9999.8*******99......7**********99************987 PP
2B377.91.1e-24158255185
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f k+ltpsdv++++rlv+pkk+a  +                   e + +l++ d+s rsW+++++y+k+s+++v+t+GW+++v+ +gL+++D+v
  XP_027075884.1 158 FHKELTPSDVGNLNRLVIPKKYALMYfphlscdaeetdediA--GEDDAELVFFDRSMRSWKFRYCYWKSSQSFVFTRGWNRYVRNKGLQAKDVV 250
                     89******************************9988887442..336789********************************************* PP

                     EEEE- CS
              B3  81 vFkld 85 
                      F+l 
  XP_027075884.1 251 SFSLF 255
                     **964 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MQEQSEISGA ATNAIQEISD SNSNSYVIQN KRQKLDNKVD SPRFKGVVVQ KNGRWGAQIY  60
AHERIWLGTF KSEIEAAMAY DSAAIKLQGR DVYRNFPWTN ITSEEPKFQS QFSTQAVLNM  120
IKDGSYPVKF VEYLRAQSFI QSFTTMPSNG GLVCKKLFHK ELTPSDVGNL NRLVIPKKYA  180
LMYFPHLSCD AEETDEDIAG EDDAELVFFD RSMRSWKFRY CYWKSSQSFV FTRGWNRYVR  240
NKGLQAKDVV SFSLFEFKNG SDEVQPIFMI DAEYHQSFRG GLMLNSSRDE NNLPETEPNG  300
STKRGLKLFG KDSKLLTAAK IHLQMSYQIL DS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-87RAV family protein