PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075597.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 554aa    MW: 61863 Da    PI: 5.921
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075597.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.15.3e-921965532374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     v+ L++ Ae++++++l+l++ +L rl+++ + p+g+p+qR+a+yf+eAL++ l++      ++  ++++++++++++++a+k+fs++sP++ fs 
  XP_027075597.1 196 VDELIRLAECFETNSLHLTHVILGRLNQRlRGPTGKPLQRAAFYFKEALQTLLTG------STRLTQPSTSSEVIQSIKAHKAFSNISPVPMFSS 284
                     678*************************99*************************......556666777778********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqa+leav+g+  +H+iDfdi+ G++W++++++La+++    + pp lRiT+v+ +e   + e + ++e+L++fA+el++ f+ ++++++++
  XP_027075597.1 285 FTANQAVLEAVDGSMLIHVIDFDIGLGGHWASFMKELADKAelrkAAPPVLRITAVVGEE--YAMESKLIRENLSQFARELNIGFDLDFVLVRTF 377
                     **************************************8776666889**********66..999999*************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpres 279
                     e  +++++++ +gE++a+ l+  ++r +          + +L+ ++++sP+vvv+ + e     ++ sF + +++ le+ys+l++slea  +   
  XP_027075597.1 378 EFCSFKAIKFMEGEKVAILLSPTIFRRV---------GTGFLSDLRRVSPHVVVHLDCEGLIgfGTMSFRQTLIDGLEFYSTLLESLEAANGGGG 463
                     ************************9998.........368*******************555449**********************66544332 PP

            GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                       ++++k+E +++ ++i ++v  +g++        + Wre++ +aG++pv+ls++a  qa++l+r+v+++g++v  ++++++l+W++r+Lv++Sa
  XP_027075597.1 464 adDWMNKMESFVIYPKILEAVGVAGRR-------GAPWREAFVAAGLRPVALSQFADFQAECLIRRVQVRGFHVARRQAEMLLCWHERALVATSA 551
                     3599*********************98.......89*********************************************************** PP

            GRAS 373 Wr 374
                     Wr
  XP_027075597.1 552 WR 553
                     *8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    
MKVPFIQNQP SILNSTKQVN CNDNNNDLRT TTTTTSINSN TFLGYEPKSV LELRQSPSPV  60
TEIPSSNTDI STVWDDTGLQ LEDHVLNHFE VDWDSLMREL GLHEDSNPTP TSRPTTFSHS  120
QFTPSGSQVQ FQNLPEFPPT HNSFDSTLFV PSDITLPDIS TYPSSFNDSS INSLGLSHDA  180
HHHNTNLTWN PGFDYVDELI RLAECFETNS LHLTHVILGR LNQRLRGPTG KPLQRAAFYF  240
KEALQTLLTG STRLTQPSTS SEVIQSIKAH KAFSNISPVP MFSSFTANQA VLEAVDGSML  300
IHVIDFDIGL GGHWASFMKE LADKAELRKA APPVLRITAV VGEEYAMESK LIRENLSQFA  360
RELNIGFDLD FVLVRTFEFC SFKAIKFMEG EKVAILLSPT IFRRVGTGFL SDLRRVSPHV  420
VVHLDCEGLI GFGTMSFRQT LIDGLEFYST LLESLEAANG GGGADDWMNK MESFVIYPKI  480
LEAVGVAGRR GAPWREAFVA AGLRPVALSQ FADFQAECLI RRVQVRGFHV ARRQAEMLLC  540
WHERALVATS AWRY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-142GRAS family protein