PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075560.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 632aa    MW: 68982 Da    PI: 4.5255
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.91.5e-1092656323374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++L+e A+ ++ +d  +a + L rl+e +s++gdp++R+a+yf+eAL  r++r   +  k+ +  +t+    +e +  +k++++++P+ kf+hlt
  XP_027075560.1 265 KALIESAR-LAGSDPDNAVKSLIRLRESVSQHGDPTERVAFYFLEALYGRVSR---QPEKSPTIFDTT---PEELTLCYKALNDACPYSKFAHLT 352
                     67888888.66779999************************************...333333444444...5688999***************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aNqaIlea+e+ +++HiiDf+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+ +p  g   + +l +tg+rL++fAe l+++fef++ v + +e+l
  XP_027075560.1 353 ANQAILEATENGTKIHIIDFGILQGVQWAALLQALATRPAGKPeRIRISGIPAPLLGksPEAALLATGKRLSDFAELLDLNFEFEP-VLTPIEEL 446
                     ***************************************76666*********9988889999***********************.799***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +  +++v+p+E laVn++lql++lld++ + ++   + Lkl kslsP vv++ e e+++n+  Fl+rf +al+yysalf+sl+ +l r+s+er  
  XP_027075560.1 447 TGASFQVDPDEILAVNFMLQLYNLLDDDNCGAE---AALKLAKSLSPSVVTLGEYEVSLNRVGFLARFKNALKYYSALFESLDPNLTRDSDERLR 538
                     *************************99999988...9********************************************************** PP

            GRAS 285 vErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     vE  l+gr+i  vv  e++   rr r+e +e+Wr  +e+aGF+pv+ls++a++qa  ll  ++ s+ y++ ++   ++ l W+d pL++vS+Wr
  XP_027075560.1 539 VESLLFGRRIAGVVGREEETgtRRDRMEDKEQWRILMESAGFEPVTLSHYAMSQAGILLWSYNySQSYKLVDSPPGFLsLAWNDLPLLTVSSWR 632
                     **************99988777*****************************************99****9988766666**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QQQQQQQFLG INPFCLSPWS TTTHSSLTTS  60
PALGYGLTGP GFADPFQVPG GCPDSAEPGF QFPPLDHHST GFRFPDFCGA PGGEFDSDEW  120
MESLMGGGDS TESSNLHSGC DAWQTGSDFN ATTIYGADPF AACPSRLSIG SSPPSSDLNR  180
VIFSETSQKS SAPPDPPQTQ PSSQWVPPSS SPPSSPLHPT AKDSSKQQQQ QQQQQQQNSA  240
SQNDAAAACT SSTSPDASPS KPLLKALIES ARLAGSDPDN AVKSLIRLRE SVSQHGDPTE  300
RVAFYFLEAL YGRVSRQPEK SPTIFDTTPE ELTLCYKALN DACPYSKFAH LTANQAILEA  360
TENGTKIHII DFGILQGVQW AALLQALATR PAGKPERIRI SGIPAPLLGK SPEAALLATG  420
KRLSDFAELL DLNFEFEPVL TPIEELTGAS FQVDPDEILA VNFMLQLYNL LDDDNCGAEA  480
ALKLAKSLSP SVVTLGEYEV SLNRVGFLAR FKNALKYYSA LFESLDPNLT RDSDERLRVE  540
SLLFGRRIAG VVGREEETGT RRDRMEDKEQ WRILMESAGF EPVTLSHYAM SQAGILLWSY  600
NYSQSYKLVD SPPGFLSLAW NDLPLLTVSS WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-163GRAS family protein