PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075523.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 273aa MW: 28300.7 Da PI: 10.1452

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.3	3.3e-39	34	135	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksa 94 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s ++s+++ s++ + XP_027075523.1 34 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvSPASARNSVGTLSAP----LD 124 789*************************************************************9999988877777777777744444....33 PP TCP 95 akskksqksaa 105 +k+ ++q++++ XP_027075523.1 125 HKPPSQQHQQQ 135 33333333222 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MSSASADGNG NGNGAIIDPS QRVTSSNNGS AALAVKKPPA KDRHSKVDGR GRRIRMPIIC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTT PASFSTVSPA SARNSVGTLS 120 APLDHKPPSQ QHQQQPLIAP TPFILGKRLR SSNEDDSINE KDDASAAAAA ATVVGSAALG 180 GGFWALPARP DLGQVWSFAA AAAQPEMVVP TLNAPQQSGM ARFLQQSTSM GEASAARVGN 240 YLPIAHQGHL NLLASLSGPP PPPSSEQREG DAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-57	TCP family protein