PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075276.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 370aa    MW: 41598.7 Da    PI: 5.1993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.000112773013055
                     C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  30 askapskKlsKaeiLekAveYIksLq 55 
                     + +++s K + a++L++A+ YI+ Lq
  XP_027075276.1 277 P-SNSSNKTDTASVLTEAIGYIQFLQ 301
                     2.67999******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    
MYPDHSSRDS QVLNKIIMES ANFNQHHDQP LQQQEHQQQQ QQQLIYPAFS SSTSSSATLV  60
STVNGQWNPS MVLEGDDFSR YMNEILPNSR DYFWPRSINS VPSVKKSLLE VDHEDSNCRD  120
FRSYLHHPLP SKGGINPGLF LKSDDMNGSI LKNSYIKNGQ QDVSIDLNEN LWIGSFSHSH  180
INQKLSTNES YSNGDGFASF VGLPPSPPNF MSSGTSESTD QHQLYASTSL LPTSQSLPLA  240
TEILNCRNFD EGHRTHESFE ERMSSDYCHL RQSSDSPSNS SNKTDTASVL TEAIGYIQFL  300
QDQIQTLSMA YLKSSRSSKS CRATRGQEVL SMKEDEDEEE RAMHDLRSRG LCLVPLAFTS  360
YVCCSYNGSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.18e-20bHLH family protein