PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075275.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 392aa    MW: 44071.7 Da    PI: 5.9779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.94.7e-052833231055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + R +++ ++++ L +l+ +      +K + a++L++A+ YI+ Lq
  XP_027075275.1 283 KVRKEKLGDRIAALHRLVSPF-----GKTDTASVLTEAIGYIQFLQ 323
                     778889999*********998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MYPDHSSRDS QVLNKIIMES ANFNQHHDQP LQQQEHQQQQ QQQLIYPAFS SSTSSSATLV  60
STVNGQWNPS MVLEGDDFSR YMNEILPNSR DYFWPRSINS VPSVKKSLLE VDHEDSNCRD  120
FRSYLHHPLP SKGGINPGLF LKSDDMNGSI LKNSYIKNGQ QDVSIDLNEN LWIGSFSHSH  180
INQKLSTNES YSNGDGFASF VGLPPSPPNF MSSGTSESTD QHQLYASTSL LPTSQSLPLA  240
TEILNCRNFD EGHRTHESFE ERMSSDYCHL RQSSDSPSNS SNKVRKEKLG DRIAALHRLV  300
SPFGKTDTAS VLTEAIGYIQ FLQDQIQTLS MAYLKSSRSS KSCRATRGQE VLSMKEDEDE  360
EERAMHDLRS RGLCLVPLAF TSYVCCSYNG SI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-33bHLH family protein