PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075273.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 414aa MW: 46339.5 Da PI: 6.8752

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	8.9e-05	307	345	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L +l+ + +K + a++L++A+ YI+ Lq XP_027075273.1 307 RKEKLGDRIAALHRLVSPF-----GKTDTASVLTEAIGYIQFLQ 345 7778889999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MESANFNQHH DQPLQQQEHQ QQQQQQLIYP AFSSSTSSSA TLVSTVNGQW NPSMVLEGDD 60 FSRYMNEILP NSRDYFWPRS INSVPSVKKS LLEVDHEDSN CRDFRSYLHH PLPSKGGINP 120 GLFLKSDDMN GSILKNSYIK NGQQDVSIDL NENLWIGSFS HSHINQKLST NESYSNGDGF 180 ASFVGLPPSP PNFMSSGTSE STDQHQLYAS TSLLPTSQSL PLATEILNCR NFDEGHRTHE 240 SFEERMSSDY CHLRQSSDSP SNSSNKTSTF RKEVSRPKTQ KPTPSLAMAK KPRVLAPQSS 300 CATLKVRKEK LGDRIAALHR LVSPFGKTDT ASVLTEAIGY IQFLQDQIQT LSMAYLKSSR 360 SSKSCRATRG QEVLSMKEDE DEEERAMHDL RSRGLCLVPL AFTSYVCCSY NGSI

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MESANFNQHH DQPLQQQEHQ QQQQQQLIYP AFSSSTSSSA TLVSTVNGQW NPSMVLEGDD  60
FSRYMNEILP NSRDYFWPRS INSVPSVKKS LLEVDHEDSN CRDFRSYLHH PLPSKGGINP  120
GLFLKSDDMN GSILKNSYIK NGQQDVSIDL NENLWIGSFS HSHINQKLST NESYSNGDGF  180
ASFVGLPPSP PNFMSSGTSE STDQHQLYAS TSLLPTSQSL PLATEILNCR NFDEGHRTHE  240
SFEERMSSDY CHLRQSSDSP SNSSNKTSTF RKEVSRPKTQ KPTPSLAMAK KPRVLAPQSS  300
CATLKVRKEK LGDRIAALHR LVSPFGKTDT ASVLTEAIGY IQFLQDQIQT LSMAYLKSSR  360
SSKSCRATRG QEVLSMKEDE DEEERAMHDL RSRGLCLVPL AFTSYVCCSY NGSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-37	bHLH family protein