PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075269.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 431aa MW: 48324.7 Da PI: 6.9137

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.4e-05	324	362	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L +l+ + +K + a++L++A+ YI+ Lq XP_027075269.1 324 RKEKLGDRIAALHRLVSPF-----GKTDTASVLTEAIGYIQFLQ 362 6778889999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MYPDHSSRDS QVLNKIIMES ANFNQHHDQP LQQQEHQQQQ QQQLIYPAFS SSTSSSATLV 60 STVNGQWNPS MVLEGDDFSR YMNEILPNSR DYFWPRSINS VPSVKKSLLE VDHEDSNCRD 120 FRSYLHHPLP SKGGINPGLF LKSDDMNGSI LKNSYIKNGQ QDVSIDLNEN LWIGSFSHSH 180 INQKLSTNES YSNGDGFASF VGLPPSPPNF MSSGTSESTD QHQLYASTSL LPTSQSLPLA 240 TEILNCRNFD EGHRTHESFE ERMSSDYCHL RQSSDSPSNS SNKTSTFRKE VSRPKTQKPT 300 PSLAMAKKPR VLAPQSSCAT LKVRKEKLGD RIAALHRLVS PFGKTDTASV LTEAIGYIQF 360 LQDQIQTLSM AYLKSSRSSK SCRATRGQEV LSMKEDEDEE ERAMHDLRSR GLCLVPLAFT 420 SYVCCSYNGS I

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MYPDHSSRDS QVLNKIIMES ANFNQHHDQP LQQQEHQQQQ QQQLIYPAFS SSTSSSATLV  60
STVNGQWNPS MVLEGDDFSR YMNEILPNSR DYFWPRSINS VPSVKKSLLE VDHEDSNCRD  120
FRSYLHHPLP SKGGINPGLF LKSDDMNGSI LKNSYIKNGQ QDVSIDLNEN LWIGSFSHSH  180
INQKLSTNES YSNGDGFASF VGLPPSPPNF MSSGTSESTD QHQLYASTSL LPTSQSLPLA  240
TEILNCRNFD EGHRTHESFE ERMSSDYCHL RQSSDSPSNS SNKTSTFRKE VSRPKTQKPT  300
PSLAMAKKPR VLAPQSSCAT LKVRKEKLGD RIAALHRLVS PFGKTDTASV LTEAIGYIQF  360
LQDQIQTLSM AYLKSSRSSK SCRATRGQEV LSMKEDEDEE ERAMHDLRSR GLCLVPLAFT  420
SYVCCSYNGS I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-37	bHLH family protein