PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075217.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 295aa    MW: 32043.8 Da    PI: 8.1691
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
   XP_027075217.1  5 KQKWTPEEEAALKAGIAKYGVGKWSTILKDPEfsavlRSRSNVDLKDKWRN 55
                     79************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MGAPKQKWTP EEEAALKAGI AKYGVGKWST ILKDPEFSAV LRSRSNVDLK DKWRNINVMA  60
NGWGSRQRGR PGYKIAQQTA KLEDITRDLS PVVTNVPELV DAEPLSVISV KEPNSSSKTP  120
ISRLDDLILE AIAKLKEPRG SNRAAISLYI EERYLTPPNF ERLLAANLKL LTEKGRLIKV  180
KHQYRIAPTS ATIDLGIDPP PLLLEVVQKD SSNGEKKGTK VLTKAQIDAE LERLRSMTAA  240
EAAAAAAQAV AEAEAAIAEA EVAAREAEEA EAEAEAAQCF AEAALKALKC RTVLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.12e-66MYB_related family protein